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Resources For Ngs?

Can anybody please suggest some good resources (guides, tutorials, online courses, books...) for NGS pipelines and workflows? I'm interested in both RNA-seq and ChIP-seq but, given the huge number of tools available and steps involved, I don't really know where to start.

Bonus points if it's R/Bioconductor, but I'm mostly looking for a "golden standard" of NGS data processing and analysis.

Thank you!

ngs rna-seq chip-seq sequencing
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updated by Konrad Konrad • written by enricoferrero enricoferrero

3 answers

Just one of many good resources:

http://www.bioconductor.org/packages/2.12/data/experiment/html/RnaSeqTutorial.html

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written by Zev.Kronenberg Zev.Kronenberg

Thanks, I didn't find it myself. Shame is a bit out of date.

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written by enricoferrero enricoferrero

When I did RNA-seq for the first time, this tutorial was pretty helpful.

http://vallandingham.me/RNA_seq_differential_expression.html

• 72 views • link
written by Vivek Vivek

Maybe the NGS WikiBook is be useful for you. There is a recent publication about it.

• 122 views • link
written by Konrad Konrad

Thanks, this really looks like what I'm looking for. Looking forward to see it completed.

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written by enricoferrero enricoferrero

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