Hello experts, I'm unable to understand how the internal branch numbers assigned in PAML or how could I easily put it in any software that …

Hi all, I was trying to use PAML (codeml) to calculate dn/ds i converted aligned fasta file to phylip format. but it keeps giving me …

Hello, I have made a codon alignment using pal2nal and generated a .codon file. Now I want to calculate the dN/dS values using paml. How …

<p>I was wondering if others get drastically different results performing the MK Test and dN/dS (via PAML) on the same sequence data. While both tests …

<p><strong>Biopython</strong> comes with methods to interface with the <strong>PAML</strong> package for phylogenetic analysis.</p> <p>In particular I am using <a href='http://biopython.org/wiki/PAML'>Bio.Phylo.PAML</a> to run analyses using PAML's …

<p>Detail: look into this result,some location(about 400bp),their dN/dS equal 0 . the result of dN/dS is N/A . this result means the input data was …

<p>for detail one protein X by dNdS calculation</p> <p>fish urchin dN/dS =0.5</p> <p>human mus dN/dS = 0.01</p> <p>what’s the biological meaning between two group</p> <p>how …

<p>I have a dataset with lots of dN/dS values coming out from PAML, my question is how can i normalize the data for parametric correlations? …

<p>hi, all</p> <p>I have several single-copy gene families identified from 12 genomes, Now I want to know evolution rate differences between these gene families, I …

<p>Hi,</p> <p>I have a set of 383 coding sequences in which there is a whole bunch of SNPs. I only have two species (2 populations …