Is there any database contains all possible binding sites of a transcription factor all over the genome
Hi all, As title says. or other tool can be used to find protein-DNA binding location? Thanks
ps: I tried to use FIMO as well as a PWM downloaded from JASPAR to scanning my fasta file(generated from chip-seq peak region). For a particular transcription factor that has a well-defined motif, am I doing this right?
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that is an OK approach indeed.
Other DBs you might consider: TransFac (need a license I think), PlantCare, ...