PWM Scan For Toxoplasma gondii

I want to find a PWM-motif that is present in promoter regions of Toxoplasma gondii. I basically want to see the presence of specific DNA sequence [PWM-motif] in the promoter region which I obtained using transcription factors (protein) - DNA interaction studies, Protein Binding Microarray [PBM].

What can you recommend? (Programs, Packages, Databases, Advice)

toxoplasmagondii pwm pbm transcriptionfactors

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updated 5.4 years ago by Ram

• written 11.3 years ago by mercadocapote •

1 answer

Check out the MEME suite for software to scan sequences for PWM sites.

CISBP is a nice motif database, but none of the 219 TFs for Toxoplasma gondii seem to have high quality supporting evidence.

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updated 5.4 years ago by Ram

• written 11.3 years ago by Kamil

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