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Chip- Chip Seq - Seaching For Curated Transcription Factors

I am using ChIP- ChIP Seq for analysing Histone modification during some binding of protein directly or indirectly to a DNA. The signature of binding nucleotide sequence is often shown in terms of PWM (position weight matrix). PWM shows the probability of a nucleotide at a position in sequence if it binds to a transcription factor. So I am searching for some curated Transcription factors to do a comparative study for the same. can any one suggest me any curated repository. I have already gone through TRANSFAC. do you recommend any other database.

chip-seq transcription
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updated by Puthier Puthier • written by Anuraj Nayarisseri • Anuraj Nayarisseri

3 answers

JASPAR and TRANSFAC are the two resources that I see referenced most.

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written by Andrew Su Andrew Su

Try Jaspar or Pazar.

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written by Casey Bergman Casey Bergman

Uniprobe could be also of interest.

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written by Puthier Puthier

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