How to creat customs track from given jaspar weighted matrix and view in genome browser?
I am from wet lab and in the very beginning of my bioinformatics learning curve. Here are some rookie questions:
- How to blast whole genome for putative transcription factor binding sites of which a JASPAR ID is available? After I am done with it, can I view it like I am viewing a peak calling BED file in UCSC genome browser?
- I have with me a BED file from published ChIP-Seq data, can I search for putative transcription factor binding site of another transcription factor I am interested in within the peaks of the BED file? Furthermore, can I search for putative binding site around the peaks in such given BED file?
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muhe1985 •
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muhe1985 •
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