This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Picrust2 and EC description

Hello all, i did Picrust 2 for predicting some functional gene as described in the tutoriel on github, i got a list of EC with a description column . How can i get level L1, l2 and L3 of KEGG pathway. is there a web server for that ?

gene
• 4,117 views • link
updated by andres.firrincieli andres.firrincieli • written by Claire • Claire

1 answer

Hi Claire,

for the pathways use this link: https://www.genome.jp/kegg/tool/map_pathway1.html

• 0 views • link
written by andres.firrincieli andres.firrincieli

Thank you for your attention Andres, Well i am trying to give name to 1200 of these functions .
I have 1200 KEGG EC Ids like EC:1.1.1.116 , EC:1.1.1.137 and so on . I have retrieved it for my genome using picrust2. I want to retrieve corresponding name at the 3 levels like: Metabolism, Carbohydrate metabolism, Fructose and mannose metabolism any advice, thank you

.

• 0 views • link
written by Claire • Claire

Hi Claire,

upload your EC numbers as txt file:

1.1.1.116
1.1.1.137 
...

And then run KEGG mapper in Reference mode

• 0 views • link
written by andres.firrincieli andres.firrincieli

Log in to answer this question.

More posts like this