More posts like this
-
mtDNA variants from WGS data
written by wonde2000 •Dear all, I hope this message finds you well. I have whole-genome sequencing (WGS) data from cattle populations and am interested in analyzing mitochondrial DNA …
-
MinION Data Examples (FAST5) Database
written by hkarakurtHello everyone, I am constructing a pipeline to analyze Oxford Nanopore MinION data. I have start from FAST5 files and for some optimizations I will …
-
Good Books/Resources to learn metagenomic analysis?
written by jimpinney •I've been searching around to find some good resources on metagenomic shotgun analysis but I can't really find any. I've read the biostars handbook section …
-
How to determine X depth of raw reads (FASTQ files)
written by hashish •Dear All, Please, may someone help me how to determine the X depth of raw reads (FASTQ) files generated from MiSeq? Using any windows-based or …
-
Online tool or software to remove adaptors from MISeq data
written by hashish •Dear All, I have received my data from MISeq. and right now I am doing FASTQC. I have problems with Adaptor content. Any recommended online …
-
Can live basecalling be stopped without losing raw data?
written by ryan.gawryluk •Hi! I'm fairly new to Nanopore sequencing. I decided that it would be fun to run the minION with live basecalling (on a ~175 Mbp …
-
Using DESeq2with Oxford Nanopore Technology Direct RNA Sequencing
written by uhlkatie •I am trying to develop a workflow for performing differential expression analysis on long read direct RNA sequencing performed using the MinION from Oxford Nanopore …
-
Metagenomics nanopore data
written by Sitara •Hello all I have downloaded public nanopore metagenomic data. I have used minimap2 for the alignment of long nanopore reads. I am interested in calculating …
-
Sequence Header Convertion from Nanopore to PacBio
written by dani357 •I want to use the FALCON assembler. I did sequencing using Oxford naopore MinION. I need to convert the sequence header from nanopore to PacBio …
-
News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 Nov…
written by Bert OverduinWe are currently accepting applications for our 1-day workshop "Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications". This workshop is aimed at anyone …
If you search with
minion nanopore sequencing metagenomicsit brings up a number of recent papers.You would want to use
nanopackfrom @Wouter de coster for QC analysis of your data.Thank you for letting me know