Sequence Header Convertion from Nanopore to PacBio
1 answer
DASCRUBBER-wrapper has a method called rename_reads_with_fake_pacbio_names. I think you convert the subreads to fasta file.
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This request sounds unusual at best. FALCON diploid assembler is designed for PacBio data. You are not going to have subreads files etc. Would be interesting if anyone has tried something like this.
The assembler CANU would appear to be a better option.
Did you have any luck adjusting minion reads for use with falcon? and/or falcon unzip?