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Bert Overduin
Bert Overduin
Reputation:
3,730
Joined:
15.4 years ago
Last seen:
10.0 years ago
Location:
Edinburgh Genomics, The University of Edinburgh

I am a wet lab biologist turned IT consultant turned bioinformatician. After working for 9 years at the European Bioinformatics Institute (EBI) as Helpdesk & Outreach Officer within the Ensembl group, I started on 1 May 2014 at Edinburgh Genomics, where I am responsible for organising bioinformatics training and outreach.

Latest posts by user
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News: Introduction to Python for Biologists, 11-15 September 2017, Edinburgh
programming python workshop
updated by Ram Ram • written by Bert Overduin Bert Overduin
3 votes
0 replies
3.0K views
News: Workshop: GATK Best Practices for Variant Discovery, Edinburgh, 17-19 July 2017
gatk workshop variant-calling
updated by Ram Ram • written by Bert Overduin Bert Overduin
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News: Python Programming Workshops at Edinburgh Genomics
programming python training
updated by Ram Ram • written by Bert Overduin Bert Overduin
1 vote
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News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh
oxford-nanopore training minion
updated by Ram Ram • written by Bert Overduin Bert Overduin
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0 replies
2.3K views
News: Workshop: Data Manipulation and Visualisation with Python, 5-9 Sep 2016, Edinburgh
visualisation workshop python
updated by Ram Ram • written by Bert Overduin Bert Overduin
3 votes
0 replies
3.5K views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
python
updated by Ram Ram • written by Bert Overduin Bert Overduin
1 vote
0 replies
2.0K views
News: Announcement: Workshop GATK Best Practices for Variant Discovery, 20-21 April 2015, Edinburgh, UK
snp next-gen
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Answer: Answer: Assigning locus to set of SNPs based on its chromosome position
updated by Ram Ram • written by Bert Overduin Bert Overduin
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1 reply
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Comment: Comment: How to link UCSC peptide to transcripts
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Comment: Comment: Missing gene symbols in biomart
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Answer: Answer: Convert Rs# to .VCF file?
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Answer: Answer: number of .bam reads mapping to genes in gff format
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Comment: C: Identifying Chromosomal Position from Gene ID, Mutations, and their Locations
written by Bert Overduin Bert Overduin
1 vote
1 reply
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Comment: Comment: First Intron extraction from ensembl
updated by Ram Ram • written by Bert Overduin Bert Overduin
2 votes
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Answer: A: check if ensembl_gene_id maps to primary assembly
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Answer: Answer: genome assemlers specifications
updated by Ram Ram • written by Bert Overduin Bert Overduin
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Answer: A: Rattus norvegicus Rnor5.0 GTF annotation in GENCODE format ?
written by Bert Overduin Bert Overduin
4 votes
0 replies
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Answer: Answer: Converting Ensemble Gene IDs from mmseq output file
updated by Ram Ram • written by Bert Overduin Bert Overduin
2 votes
2 replies
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Comment: C: Ensembl config option: what's the differences between ChIP-seq peak and ChIP-seq
written by Bert Overduin Bert Overduin
3 votes
0 replies
2.6K views
News: Programming for Evolutionary Biology course, Nov 24 - Dec 12 2014, Bogota, Colombia
perl r linux
updated by Ram Ram • written by Bert Overduin Bert Overduin
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