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How to get a list of snp associated with any known cancer from NCBI with chromosomal locations?

I am attempting to create human circular genome (using circose) showing a scatter plot of SNPs associated with any known cancer. How can I extract out those SNP information along with chromosome number, location? Thnaks in advance.

snp cancer ncbi circos circulargenome
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updated by Ibrahim Tanyalcin Ibrahim Tanyalcin • written by mrj • mrj

3 answers

You can download the data from COSMIC: https://cancer.sanger.ac.uk/cosmic/download

Kevin

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written by Kevin Blighe Kevin Blighe

Thank you very much. This is what I wanted

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written by mrj • mrj

I would likely just download them from a cancer-specific mutation database like COSMIC.

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written by jared.andrews07 jared.andrews07

Huh, I think you ninja'd me on this one, I didn't see your answer.

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written by jared.andrews07 jared.andrews07

6 years ago I've done this tool: http://i-pv.org/ https://github.com/IbrahimTanyalcin/I-PV

here is an example:

http://i-pv.org/1_45/NFKB1

You can get the files as shown here:

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written by Ibrahim Tanyalcin Ibrahim Tanyalcin

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