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mrj
mrj
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180 (New)
Joined:
7.6 years ago
Last seen:
3.7 years ago
Location:
Yankton
Latest posts by user
5 votes
1 reply
0 views
Answer: Answer: How to merge set of bam files into one?
written by mrj 18
2 votes
1 reply
0 views
Comment: Comment: How to merge set of bam files into one?
written by mrj 18
0 votes
6 replies
3.2K views
How to merge set of bam files into one?
merge bam python pysam
updated by Ram 4.5K • | written by mrj 18
0 votes
1 reply
1.1K views
how to download NCBI partially non-redundant nucleotide dataset for prokaryotes?
ncbi prokaryote
updated by Ram 4.5K • | written by mrj 18
0 votes
0 replies
0 views
Comment: Comment: How to relate a categorical external trait (case, control) into WGCNA network?
written by mrj 18
1 vote
2 replies
1.6K views
How to relate a categorical external trait (case, control) into WGCNA network?
categorical eigen wgcna gene relate
written by mrj 18
0 votes
0 replies
850 views
How to create motifs using biopython when the sequence object contain gaps (-)?
alphabet gaps motifs_create biopython
written by mrj 18
1 vote
1 reply
0 views
Comment: Comment: How to identify the cell type computationally when you have a list of conserved
written by mrj 18
0 votes
3 replies
2.8K views
How to identify the cell type computationally when you have a list of conserved cell type markers for mouse genome (as discovered by Seurat)?
seurat scrna-seq cell_type conserved_cell_type_markers
updated by Refine 2 • | written by mrj 18
0 votes
0 replies
0 views
Comment: Comment: In single cell RNA-seq, do we perform regular quality checks and adapter trimmin
written by mrj 18
0 votes
2 replies
2.1K views
In single cell RNA-seq, do we perform regular quality checks and adapter trimming before using cellranger?
cellranger adapter_trimming qc scrna-seq
written by mrj 18
0 votes
0 replies
0 views
Comment: Comment: My ATAC-seq data returns a peak of 1bp for all the peak intervals when using Dif
written by mrj 18
0 votes
0 replies
0 views
Comment: Comment: why are all DiffBind tutorial's ATAC-seq peak intervals 400 bp for all intervals
written by mrj 18
0 votes
4 replies
6.5K views
why are all DiffBind tutorial's ATAC-seq peak intervals 400 bp for all intervals?
peak atac-seq intervals diffbind consensus
updated by Rory Stark 218 • | written by mrj 18
0 votes
1 reply
0 views
Comment: Comment: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
written by mrj 18
0 votes
3 replies
3.0K views
How to import a BED file to ChIPseeker in order to visualize genome coverage plot?
chipseeker granges import atac-seq diffbind
updated by Papyrus 310 • | written by mrj 18
0 votes
0 replies
0 views
Comment: Comment: How to check if a list of protein ID's are present in NCBI protein database?
written by mrj 18
0 votes
2 replies
1.6K views
How to check if a list of protein ID's are present in NCBI protein database?
esearch protein database ncbi
written by mrj 18
0 votes
0 replies
862 views
How to handle a esearch - elink empty result?
esearch ncbi protein elink
written by mrj 18
0 votes
0 replies
0 views
Comment: Comment: How can I export raw count profile from DiffBind to be analyzed on DESeq2 separa
written by mrj 18
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