How to make this specific "pileup" like plot?

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5.6 years ago

Vivek ▴ 50

Hi,

I came across this plot in the paper (2) that I'd like to know how to make. I have tried a couple of options, mainly through ggplot2, but none seem to yield an equivalent version --- specially the track at the bottom that appears to come from a binarized single-cell count matrix.

enter image description here

ggplot2 R single-cell • 1.5k views

ADD COMMENT • link 5.6 years ago by Vivek ▴ 50

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Why not contact the author directly? https://profiles.ucsd.edu/sebastian.preissl

ADD REPLY • link 5.6 years ago by e.benn ▴ 110

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I have.. though thought this will be faster..

ADD REPLY • link 5.6 years ago by Vivek ▴ 50

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You can try, but this group probably gets a lot of mail correspondance and will likely ignore questions about how to make a figure.

ADD REPLY • link 5.6 years ago by ATpoint 81k

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have you looked at Gviz?

ADD REPLY • link 5.6 years ago by Russ ▴ 500

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I think this is simply a screenshot from the IGV browser, plus some custom things like the box and size scale and legend. Can do this with Inkscape.

ADD REPLY • link 5.6 years ago by ATpoint 81k

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