If you had simply done

conda install genblastg

then you need to

conda activate (i.e. activate the base environment)

At this point you should be able to find the executable.

Ideally you should have created a new environment

conda create -n geneblast genblatg
conda activate genblast

To create an environment:

conda create -n genblast -c bioconda genblasta genblastg

Activate:

conda activate genblast

Then type genblastA or genblastG, as needed:

genBlastA release v1.0.1

SYNOPSIS:
Given a list of query protein or DNA sequences and a target database that
consists of DNA sequences, this program runs wu-blast tblastn on the list
of sequences provided, then for each query, it groups the resulted HSPs
into sensible groups so that each group of HSPs corresponds to a potential
target gene that is homologous to the query. The output is ranked according
to their homology to the query.

Command line options:
        -P      Search program used to produce blast-format sequence alignments,
                can be either "blast" or "wublast", default is "blast",
                optional
        -q      List of query sequences to blast, must be in fasta format,
                required
        -t      The target database of genomic sequences in fasta format,
                required
        -p      Whether query sequences are protein sequences (T/F)
                [default: T], optional
        -pg     Specify which blast/wublast program to run. If not specified,
                the default behaviour is to run tblastn (for blast/wublast protein
                sequence) / blastn (for blast nucleotide sequence) or tblastx
                (for wublast nucleotide sequence).
        -e      parameter for blast: The e-value, [default: 1e-2],
                optional
        -g      parameter for blast: Perform gapped alignment (T/F)
                [default: T], optional
        -f      parameter for blast: Perform filtering (T/F) [default: F],
                optional
        -a      parameter for genBlast: weight of penalty for skipping HSPs,
                between 0 and 1 [default: 0.5], optional
        -d      parameter for genBlast: maximum allowed distance between HSPs
                within the same gene, a non-negative integer [default: 100000],
                optional
        -r      parameter for genBlast: number of ranks in the output,
                a positive integer, optional
        -c      parameter for genBlast: minimum percentage of query gene
                coverage in the output, between 0 and 1 (e.g. for 50%
                gene coverage, use "0.5"), optional
        -s      parameter for genBlast: minimum score of the HSP group in
                the output, a real number, optional
        -o      output filename, optional. If not specified, the output
                will be the same as the query filename with ".gblast"
                extension.

Example:
genblasta -P blast -pg tblastn -q myquery -t mytarget -p T -e 1e-2 -g T -f F -a 0.5 -d 100000 -r 10 -c 0.5 -s 0 -o myoutput

(Rong She (rshe@cs.sfu.ca)      May 2010)