chipseq, how to create the density plot with real length of gene
Hi ,
I am working on H3K4me3. I am trying to create the real length representation of the profile of this histone modification in my data.
I used Ngsplot software to draw density plot on the metagene. but now I am looking for plotting the data in real length of the genes.
some plot similar to these in this paper.
I was wondering if there is software to use for this purpose. Thanks Maryam
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ghostforever.shi •
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maryamforoozani16 •
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maryamforoozani16 •
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Maybe you can try Ngsplot, which is quite useful.
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Just for me to be sure, do you want to plot the transcript length right? If this is the case, you can create a bed file with the transcripts associated with your genes and then plot it using computeMatrix tool, for example.