we have done micro array analysis for 3 conditions,we have separated all the deg for all three conditions and we have performed gene set enrichment analysis for deg genes for all three conditions.Now i have 3 files related to 3 conditions with following columns(gene set enrichment analysis)
GO Term
Universe set
No. of genes
No. of input genes
No. of overlapping genes
p-value
Gene IDs
now I have to make some analysis,like what are the GO process that are represented or affected commonly at all 3 conditions.I need some pictorial representation as below,
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manasa22.reddy •
Why not use a venn diagram, like suggested in your previous post? finding overlapping go terms
Or use Cytoscape enrichment map. However, with enrichment map you can only compare two conditions in one graph. Comparing 3 conditions in one enrichment map would be too much to understand for the human brain I guess?
yeah iam working on venn diagrams ,but i also need to plot a graph which is somewhat like the image i have linked in post.
figure no 6 in follwing article https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148957/
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