Dear all,
I am wondering whether you are familiar with Gene Set Enrichment and know how to plot the enriched pathways in a single plot together. You can help review the link
https://crazyhottommy.github.io/scRNA-seq-workshop-Fall-2019/scRNAseq_workshop_3.html
I have deg from two groups of single cell seurat and would like to perform gene set enrichment and plots all upregulated pathways together in a single plots rather than splitting them into several plots.
I have attached the enrichment plot here. Hope you could help!
Kind Regards,
synat
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written
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synat.keam •
1 answer
The plotEnrichment function is just a ggplot2 wrapper. See source code here. If you are competent in R and ggplot2, you can adapt their code or write your own. Regardless, I suggest giving it a go and if you get stuck, make another post with what you've tried and why you think you're getting stuck.
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