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Low methylation regions or non-methylation regions from WGBS dataset

Hi All,

Any method or software to recommend to identify low methylation regions or non-methylation regions from WGBS dataset?

  1. swDMR
  2. MethylSeekR

Thanks

methylation
• 2,575 views • link
updated by Ram Ram • written by Shicheng Guo Shicheng Guo

2 answers

MethylSeekR from Bioconductor

• 1 views • link
written by Devon Ryan Devon Ryan

Any recommendation for plant methylation? (CHH and CHG methylation are also involved)

• 1 views • link
written by Antonio R. Franco Antonio R. Franco

I would still try MethylSeekR there as well. If it starts demanding CpGs then one can probably just lie to it and still get the correct results (maybe try a little test dataset first).

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written by Devon Ryan Devon Ryan

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