Roadmap WGBS methylation data download

Question

[Shicheng Guo]

Hi All,

Is there any easy way to download all the WGBS data (Bam or Wig) of Roadmap project?

I'd like to have a FTP or Wget weblinks.

Thanks.

Answer 1

[tim.triche]

WIGs and SRA: https://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/?search=bisulfite&display=181

FASTQs (example for CD14+ WGBS from the Broad within the REMC project): http://www.ebi.ac.uk/ena/data/view/SRR1104848

Plan on plugging in the SRR/SRX numbers for the ENA template individually, but it's still faster than using slowq-dump.