Methylation correlation between adjacent CpGs in certain genomic interval from BAM files

Question

[Shicheng Guo]

Hi All,

I was asked to calculate the correlation (Pearson) of the methylation between the adjacent CpGs with the reads from the BAM files (BS-seq). Any script or software?

Thanks. I have made the perl script.

Thanks

Best regards

[Sean Davis]

If you have got an answer, would you mind sharing it with the community so that folks can learn from your experience?