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0
votes
0
replies
2.7k
views
Comment:
C: Is it correct if we use htseq counts as raw read counts in DESEq2?
5.9 years ago by
nazaninhoseinkhan
▴ 520
2
votes
5
replies
2.7k
views
Is it correct if we use htseq counts as raw read counts in DESEq2?
RNA-Seq
DESeq2
htseqCounts
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.7k
views
Comment:
C: Is it correct if we use htseq counts as raw read counts in DESEq2?
5.9 years ago by
nazaninhoseinkhan
▴ 520
1
vote
0
replies
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.4k
views
Comment:
C: how to define different batches in DESeq2 in Galaxy
5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.8k
views
Comment:
C: HTSeq-counts can not map any reads to gtf file
5.9 years ago by
nazaninhoseinkhan
▴ 520
1
vote
3
replies
1.8k
views
HTSeq-counts can not map any reads to gtf file
RNA-Seq
htseq-counts
no mapped reads
updated 5.9 years ago by
Friederike
8.9k • written 5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
13k
views
Comment:
C: error in getting results from DESeq2
5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
5
replies
13k
views
error in getting results from DESeq2
DESeq2
results
error
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
2
replies
5.6k
views
Comment:
C: problem in matching the names between file names and patients Id in TCGA
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.3k
views
Comment:
C: Low number of healthy samples in TCGA
6.0 years ago by
nazaninhoseinkhan
▴ 520
5
votes
3
replies
2.3k
views
Low number of healthy samples in TCGA
TCGA
GDC portal
Healthy samples or adjacent normal
updated 6.0 years ago by
Kevin Blighe
88k • written 6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
3.9k
views
Comment:
C: error in "DESeqDataSetFromMatrix" function in DESeq2
6.0 years ago by
nazaninhoseinkhan
▴ 520
1
vote
1
reply
2.8k
views
removing batch effects from large number of data sets
Microarray
batch-effect
updated 4 weeks ago by
Ram
43k • written 6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
3.9k
views
Comment:
C: error in "DESeqDataSetFromMatrix" function in DESeq2
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
4
replies
3.9k
views
error in "DESeqDataSetFromMatrix" function in DESeq2
RNA-Seq
DESeq2
error message
updated 6.0 years ago by
Devon Ryan
104k • written 6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.5k
views
Differential co-expression analysis on TCGA transcriptomic data
RNA-Seq
miRNA-Seq
differential expression
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.0k
views
Comment:
C: How to download data for normal solid tissue from GDC using TCG2bed
6.0 years ago by
nazaninhoseinkhan
▴ 520
1
vote
2
replies
2.0k
views
How to download data for normal solid tissue from GDC using TCG2bed
TCGA2BED
Normal data
GDC portal
6.0 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.4k
views
Drawing heatmap of expression data using GENE-E
Scaling
Heatmap
GENE-E
6.1 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.8k
views
How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
CNV
GDC
updated 10 months ago by
Ram
43k • written 6.1 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
1.8k
views
Comment:
C: Illumina BeadChip Array probe file Vs control probe file
6.1 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.1k
views
Removing batch effects between Affymetrix and Agilent platforms using ComBat
Microarray
Affymetrix
Agilent
ComBat
updated 6.1 years ago by
andrew.j.skelton73
6.6k • written 6.1 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
5.7k
views
Comment:
C: batch effect removal from several RNASeq experiments
6.1 years ago by
nazaninhoseinkhan
▴ 520
1
vote
2
replies
5.7k
views
batch effect removal from several RNASeq experiments
RNA-Seq
Batch effect removal
6.1 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
960
views
Preparing functional gene set for DECODE program
DECODE
Functional gene set
updated 6.2 years ago by
h.mon
35k • written 6.2 years ago by
nazaninhoseinkhan
▴ 520
3
votes
5
replies
9.5k
views
Biobase library in R
R
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.8k
views
Answer:
A: StringTie error: list index out of range
6.3 years ago by
nazaninhoseinkhan
▴ 520
0
votes
3
replies
1.8k
views
StringTie error: list index out of range
StringTie
error
Galaxy
6.3 years ago by
nazaninhoseinkhan
▴ 520
0
votes
4
replies
2.1k
views
StringTie cannot be run as a problem in naming convention
StringTie
Gene naming convention
GTF
updated 6.3 years ago by
jean.elbers
★ 1.7k • written 6.3 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.1k
views
Comment:
C: StringTie cannot be run as a problem in naming convention
6.3 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
1.2k
views
cannot permanently delete a collection of data sets to retrieve the memory in GALAXY
collection of data sets
permanently delete
galaxy
6.4 years ago by
nazaninhoseinkhan
▴ 520
1
vote
6
replies
1.4k
views
CuffDiff results does not seem correct
RNA-Seq
CuffDiff
Galaxy
6.4 years ago by
nazaninhoseinkhan
▴ 520
2
votes
1
reply
2.7k
views
Is it correct to consider the genes of grey module resulted from consensus network analysis (WGCNA) as differential expressed?
WGCNA
Consensus network
Differential expressed
updated 6.4 years ago by
Devon Ryan
104k • written 6.4 years ago by
nazaninhoseinkhan
▴ 520
3
votes
5
replies
2.4k
views
what to do when adjusted p-values are not acceptable in RNASeq?
RNA-Seq
FDR
6.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.4k
views
Answer:
A: what to do when adjusted p-values are not acceptable in RNASeq?
6.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.1k
views
Comment:
C: Deseq2 does not recognize htseq count outputs
6.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.1k
views
Comment:
C: Deseq2 does not recognize htseq count outputs
6.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.1k
views
Comment:
C: Deseq2 does not recognize htseq count outputs
6.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.1k
views
Comment:
C: Deseq2 does not recognize htseq count outputs
6.7 years ago by
nazaninhoseinkhan
▴ 520
1
vote
9
replies
2.1k
views
Deseq2 does not recognize htseq count outputs
RNA-Seq
Deseq2
inputs are not recognized
6.7 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: problem in loading systemPipeR and RNASeqGene packages in R 3.4.1
6.8 years ago by
nazaninhoseinkhan
▴ 520
0
votes
1
reply
2.5k
views
Comment:
C: problem in loading systemPipeR and RNASeqGene packages in R 3.4.1
updated 6.8 years ago by
WouterDeCoster
47k • written 6.8 years ago by
nazaninhoseinkhan
▴ 520
0
votes
0
replies
2.5k
views
Comment:
C: problem in loading systemPipeR and RNASeqGene packages in R 3.4.1
6.8 years ago by
nazaninhoseinkhan
▴ 520
304 results • Page
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