batch effect removal from several RNASeq experiments
Dear all,
I want to compared a few RNASeq experiments results.
I am seeking a method to remove batch effects from these data sets.
Does anyone know any method to do this? a method like ComBat that is used for Microarray data?
Thank u in advance
Nazanin Hosseinkhan
• 6,158 views
•
link
written
by
nazaninhoseinkhan
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Can a pathogenic mutation results in the up-regulation of a gene?
written by nazaninhoseinkhan
-
Combat for microbiome batch effects
written by ymj •
-
removing outliers before running DESeq2
written by nazaninhoseinkhan
-
what TCGA biospecimen filter should be selected for retrieving "invasive ductal breast carcinoma" d…
written by nazaninhoseinkhan
-
removing batch effects from large number of data sets
written by nazaninhoseinkhan
-
How to download data for normal solid tissue from GDC using TCG2bed
written by nazaninhoseinkhan
-
Drawing heatmap of expression data using GENE-E
written by nazaninhoseinkhan
-
Illumina BeadChip Array probe file Vs control probe file
written by nazaninhoseinkhan
-
Removing batch effects between Affymetrix and Agilent platforms using ComBat
written by nazaninhoseinkhan
-
lncRNA target identification
written by nazaninhoseinkhan
Some past posts that may be useful:
Remove batch effect for differential expression
What is the simple way to remove known batch effect from RNA-seq data ?
Thank u for your prompt response