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what TCGA biospecimen filter should be selected for retrieving "invasive ductal breast carcinoma" data?

Dear all,

I want to download RNASeq data related to "invasive ductal carcnoma" breast cancer.

Is there a biospecimen filter that I can use to retrieve specifically invasive ductal carcnoma" breast cancer data from TCGA?

Thank u in advance

Nazanin

tcga invasive ductal carcinoma
• 2,261 views • link
written by nazaninhoseinkhan nazaninhoseinkhan

From where are you aiming to download the data? The abbreviation for the breast invasive ductal carcinoma data is BRCA, and all other abbreviations are listed here: TCGA Study Abbreviations

• 1 views • link
written by Kevin Blighe Kevin Blighe

Hi, I am trying to get data from GDC portal.

Thanks for the help, yes I found out that all biospecimens are invasive carcinoma.

I have another question:

  • how can I find the protocol of library preparation of my data? I need BRCA data to be prepared by rRNA depletion method.
• 1 views • link
written by nazaninhoseinkhan nazaninhoseinkhan

Thank u so much

I am really expressed by your expertise in different fields of bioinformatics

• 1 views • link
written by nazaninhoseinkhan nazaninhoseinkhan

No problem, my friend. Please do not hesitate to come back for more advice in the future.

• 1 views • link
written by Kevin Blighe Kevin Blighe

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