how to define different batches in DESeq2 in Galaxy

Question

[nazaninhoseinkhan]

Dear all,

I have a RNASeq data set including tumor and healthy samples. However they have been collected from different laboratories.

I want to know how should I define different laboratories as groups when using DESeq2.

I have already performed this in R, however I want to do this in Galaxy this time.

Any comment appreciated

Nazanin

[nazaninhoseinkhan]

Hi again,

I found the solution

Regards

Nazanin

Answer 1

[ra]

Glad you found the solution.

As a note, Galaxy Biostar focuses on using Galaxy.