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686
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Comment: Comment: WGCNA: many over and under-expressed features in modules of a signed network
11 months ago by Sebastian Hesse ▴ 340
3
votes
3
replies
686
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WGCNA: many over and under-expressed features in modules of a signed network
WGCNA
updated 11 months ago by 3.6k • written 11 months ago by ▴ 340
0
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0
replies
1.3k
views
Comment: Comment: LIMMA: where to find the ANOVA?
12 months ago by Sebastian Hesse ▴ 340
5
votes
2
replies
1.3k
views
LIMMA: where to find the ANOVA?
bioconductor LIMMA R
12 months ago by Sebastian Hesse ▴ 340
0
votes
0
replies
411
views
Input data for LIMMA: unnormalised or vsn or other?
limma normalisation
updated 11 weeks ago by 43k • written 14 months ago by ▴ 340
1
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1
reply
25k
views
Answer: A: Selection Of Background Gene Set In Enrichment Analysis
3.2 years ago by Sebastian Hesse ▴ 340
0
votes
0
replies
721
views
ANOVA and TUKEYs post-test for 3 groups in R
R expression
updated 3.3 years ago by 82k • written 3.3 years ago by ▴ 340
0
votes
0
replies
789
views
Comment: C: Weights in normalizeCyclicLoess (Limma, R)
3.4 years ago by Sebastian Hesse ▴ 340
2
votes
1
reply
1.5k
views
Correlating metadata with expression based k-means cluster (in R)
R k-means clustering
updated 3.5 years ago by ★ 2.9k • written 3.7 years ago by ▴ 340
0
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0
replies
1.8k
views
Answer: A: Data processing order: normalisation or batch effect correction first?
3.5 years ago by Sebastian Hesse ▴ 340
1
vote
2
replies
1.8k
views
Data processing order: normalisation or batch effect correction first?
limma proteome batch-effect R
updated 9 days ago by 43k • written 3.5 years ago by ▴ 340
65
votes
10
replies
106k
views
6 follow
Fold change - a final explanation
RNA-Seq
updated 3.7 years ago by ▴ 10 • written 5.5 years ago by ▴ 340
1
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0
replies
6.0k
views
Answer: A: Top Variable DEGs into a heatmap
3.7 years ago by Sebastian Hesse ▴ 340
0
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0
replies
2.1k
views
Comment: C: Usage of selectLab in PCAtools, R
3.9 years ago by Sebastian Hesse ▴ 340
3
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1
reply
2.1k
views
Answer: A: Usage of selectLab in PCAtools, R
3.9 years ago by Sebastian Hesse ▴ 340
8
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9
replies
2.1k
views
Usage of selectLab in PCAtools, R
R PCAtools
3.9 years ago by Sebastian Hesse ▴ 340
0
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0
replies
2.1k
views
Comment: C: Usage of selectLab in PCAtools, R
3.9 years ago by Sebastian Hesse ▴ 340
0
votes
2
replies
2.1k
views
Comment: A: Usage of selectLab in PCAtools, R
3.9 years ago by Sebastian Hesse ▴ 340
0
votes
1
reply
789
views
Weights in normalizeCyclicLoess (Limma, R)
R limma normalizeCyclicLoess
3.9 years ago by Sebastian Hesse ▴ 340
4
votes
7
replies
5.0k
views
Selecting the background for GO enrichment analysis (proteomics)
GO enrichment proteomics clusterProfiler
updated 4.0 years ago by • 0 • written 5.0 years ago by ▴ 340
1
vote
2
replies
2.4k
views
Design matrix for voom: with or without batch blocking?
r voom limma proteomics
updated 4.3 years ago by ★ 7.0k • written 5.3 years ago by ▴ 340
1
vote
2
replies
2.2k
views
How to correctly correct for batch effects
r removeBatchEffect LIMMA PVCA
updated 4.3 years ago by 20 • written 5.2 years ago by ▴ 340
3
votes
4
replies
5.1k
views
Using clusterprofiler (or else) top look for enrichment of one specific GO term
r clusterprofiler bioconductor enrichment
updated 4.5 years ago by • 0 • written 5.1 years ago by ▴ 340
0
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0
replies
5.1k
views
Comment: C: Using clusterprofiler (or else) top look for enrichment of one specific GO term
5.1 years ago by Sebastian Hesse ▴ 340
0
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0
replies
9.1k
views
Comment: C: PVCA message: boundary (singular) fit: see ?isSingular
5.1 years ago by Sebastian Hesse ▴ 340
0
votes
4
replies
9.1k
views
PVCA message: boundary (singular) fit: see ?isSingular
pvca r
5.1 years ago by Sebastian Hesse ▴ 340
1
vote
0
replies
1.8k
views
Comment: C: Interpretation of linear modelling quality test
5.2 years ago by Sebastian Hesse ▴ 340
7
votes
5
replies
5.5k
views
removeBatchEffect with or without log2 values
removeBatchEffect limma r
5.2 years ago by Sebastian Hesse ▴ 340
2
votes
0
replies
5.5k
views
Answer: A: removeBatchEffect with or without log2 values
5.2 years ago by Sebastian Hesse ▴ 340
0
votes
1
reply
5.5k
views
Comment: C: removeBatchEffect with or without log2 values
5.2 years ago by Sebastian Hesse ▴ 340
1
vote
0
replies
673
views
Conditions for valid batch effect correction
r batch-effect
updated 9 days ago by 43k • written 5.2 years ago by ▴ 340
5
votes
5
replies
1.8k
views
Interpretation of linear modelling quality test
r statistics proteomics
5.3 years ago by Sebastian Hesse ▴ 340
0
votes
2
replies
3.1k
views
ComBat correction with one batch containing only one sample - keep or remove?
combat sva proteome R
updated 5.3 years ago by 20 • written 5.5 years ago by ▴ 340
0
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0
replies
3.1k
views
Comment: C: ComBat correction with one batch containing only one sample - keep or remove?
5.3 years ago by Sebastian Hesse ▴ 340
3
votes
5
replies
2.6k
views
LIMMA analysis with 2 samples in comparison group
limma r proteomics
5.3 years ago by Sebastian Hesse ▴ 340
1
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1
reply
2.6k
views
Comment: A: LIMMA analysis with 2 samples in comparison group
5.3 years ago by Sebastian Hesse ▴ 340
0
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0
replies
1.3k
views
Comment: C: About BatchQC packages error
5.5 years ago by Sebastian Hesse ▴ 340
0
votes
0
replies
106k
views
Comment: C: Fold change - a final explanation
5.5 years ago by Sebastian Hesse ▴ 340
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