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0
votes
4
replies
917
views
Overlapping bases count in WGS
wgs overlap count metrics bases
2.5 years ago by NB ▴ 960
12
votes
3
replies
20k
views
Calculate z-scores from GWAS summary stats
summary-stats GWAS z-scores
updated 21 months ago by 43k • written 9.0 years ago by ▴ 960
5
votes
11
replies
2.0k
views
CNV and pseudogenes
cnv NGS pseudogenes exomedepth
updated 4.0 years ago by ▴ 360 • written 5.6 years ago by ▴ 960
1
vote
6
replies
1.9k
views
Calculate coverage from SAM file
sam coverage no header samtools
updated 4.3 years ago by ▴ 330 • written 4.3 years ago by ▴ 960
2
votes
9
replies
3.8k
views
Convert vcf phased data to plink
vcf plink phased-haplotype
updated 9 months ago by 43k • written 4.8 years ago by ▴ 960
5
votes
8
replies
2.6k
views
Downsample BAM for targeted NGS panels
downsample targeted-NGS sambamba
updated 5.0 years ago by ▴ 30 • written 5.1 years ago by ▴ 960
0
votes
1
reply
3.2k
views
Plots using GWAS and eQTL datasets with locuszoom
GWAS eQTL locuszoom plots
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 960
0
votes
7
replies
1.9k
views
File format for HGMD pro file flat
variant-analysis HGMD annovar
updated 13 months ago by 43k • written 5.3 years ago by ▴ 960
3
votes
3
replies
1.6k
views
Extract info on OMIM Phenotype
OMIM database extract
updated 5.3 years ago by 141k • written 5.3 years ago by ▴ 960
2
votes
5
replies
3.0k
views
Difference in Haplotypecaller in GATKv4 Vs Gatk3.7
gatk haplotypecaller
updated 5.5 years ago by ▴ 90 • written 5.5 years ago by ▴ 960
0
votes
4
replies
1.9k
views
Tools to detect CNV for NGS-mtDNA
mtDNA NGS
updated 10 months ago by 43k • written 5.6 years ago by ▴ 960
8
votes
7
replies
2.5k
views
Down sampling BAM files for CNV detection
dowsampling BAM CNV NGS
updated 5.7 years ago by 47k • written 5.7 years ago by ▴ 960
3
votes
4
replies
2.3k
views
Identify or update refseq transcript version on snpeff
snpeff refseq variant-annotation ngs
5.7 years ago by NB ▴ 960
5
votes
15
replies
5.4k
views
Annotation with snpEFF
annotation vcf snpeff extractFields
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 960
0
votes
1
reply
3.7k
views
CNV calling using ExomeDepth
CNV ExomeDepth reference
updated 6.0 years ago by 6.5k • written 6.0 years ago by ▴ 960
2
votes
4
replies
1.4k
views
mm10: Sequence length difference between interval file and reference
mm10 sequence length ucsc mouse reference
updated 6.1 years ago by 161k • written 6.1 years ago by ▴ 960
5
votes
9
replies
3.9k
views
VEP tools output
vep ensembl output
updated 6.1 years ago by ★ 2.4k • written 6.2 years ago by ▴ 960
2
votes
3
replies
1.9k
views
Unit-testing for NGS data analysis pipeline
unit-testing NGS pipeline
updated 6.2 years ago by ▴ 150 • written 6.2 years ago by ▴ 960
8
votes
9
replies
5.7k
views
Computer specs for Bioinformatics
computer specs desktop
updated 6.4 years ago by 104k • written 6.4 years ago by ▴ 960
1
vote
12
replies
2.7k
views
Detection of deletion for mitochondrial NGS analysis at position 3107
mitochondria NGS alignment mtDNA
updated 6.4 years ago by ★ 2.9k • written 6.4 years ago by ▴ 960
2
votes
5
replies
4.2k
views
HGVS annotation for intronic indels with annovar
annotation indels intronic HGVS
6.5 years ago by NB ▴ 960
8
votes
6
replies
2.1k
views
NGS data preprocessing from NextSeq
data preprocessing nextSeq
updated 6.6 years ago by 104k • written 6.6 years ago by ▴ 960
0
votes
0
replies
1.6k
views
How to convert Sequenom genotype data to plink
plink sequenom
updated 9 months ago by 43k • written 7.9 years ago by ▴ 960
4
votes
3
replies
2.8k
views
What is the best tool for association analysis for indels ?
indels association-analysis
updated 10 months ago by 43k • written 8.0 years ago by ▴ 960
2
votes
5
replies
11k
views
How to interpret heterozygosity rate ?
heterozygosity plink
updated 18 months ago by 43k • written 8.7 years ago by ▴ 960
0
votes
0
replies
1.7k
views
Error in Snp set analysis using MetaSKAT
MetaSKAT R
updated 14 months ago by 43k • written 9.0 years ago by ▴ 960
0
votes
1
reply
2.0k
views
Tools/Softwares to find proxies for Indels
indels proxies
updated 23 months ago by 43k • written 9.2 years ago by ▴ 960
2
votes
1
reply
2.1k
views
NGSrich target enrichment: software error
software error NGSrich
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 960
9
votes
5
replies
7.2k
views
Plink allele scoring output
plink allele-scoring
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 960
0
votes
0
replies
3.5k
views
conditional analysis and gene-wide analysis
conditional analysis gene-wide analysis interpret
updated 9.4 years ago by 20 • written 9.5 years ago by ▴ 960
5
votes
6
replies
18k
views
Pros and cons of Illumina HiSeq and Next Seq
hi-seq illumina next-seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 960
2
votes
4
replies
2.3k
views
plotting pvalues from 2 data sets
pvalues plots
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 960
0
votes
4
replies
1.8k
views
follow-up on a significant variant/Gene
protein follow-up SNP
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
0
votes
2
replies
3.6k
views
extract SNPs from compressed PLINK files
PLINK
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
5
votes
5
replies
7.5k
views
Convert .Pre Files To .Ped And .Map Files For Plink
plink
updated 9.7 years ago by ▴ 40 • written 11.9 years ago by ▴ 960
5
votes
3
replies
6.3k
views
Low Coverage Depth On Exome Sequencing
exome-sequencing coverage
updated 10.0 years ago by ★ 1.1k • written 10.1 years ago by ▴ 960
5
votes
6
replies
4.5k
views
How Can I Annotate Cnvs
cnv
updated 10.1 years ago by ▴ 90 • written 11.0 years ago by ▴ 960
0
votes
2
replies
2.3k
views
How Can I Overlay My Snp Variants With Various Databases
1000genomes hapmap dbsnp
updated 10.8 years ago by ▴ 120 • written 11.0 years ago by ▴ 960
4
votes
5
replies
1.7k
views
Why Is The Snp Info Missing From Dbsnp ?
snp dbsnp
updated 10.8 years ago by 14k • written 10.8 years ago by ▴ 960
1
vote
5
replies
7.3k
views
How To Create Cluster Files For Plink When Performing A Stratified Analysis On Three Different Population Datasets
deleted-post
updated 11.1 years ago by 100k • written 11.1 years ago by ▴ 960
3
votes
1
reply
1.8k
views
Where To Obtain The Allele Frequency Information Of The 200 Danish Exomes?
hg19
updated 11.1 years ago by 100k • written 11.1 years ago by ▴ 960
13
votes
4
replies
4.0k
views
Rare Variant Snps With No Allele Frequency
updated 11.2 years ago by ▴ 370 • written 11.2 years ago by ▴ 960
0
votes
1
reply
4.7k
views
Prediction Tools For Snps - Grantham Scores And Phylop
updated 11.4 years ago by 12k • written 11.4 years ago by ▴ 960
2
votes
3
replies
2.4k
views
How To Convert Ccds Ids To Swiss Prot Ids
swissprot ccds
updated 9 months ago by 43k • written 11.5 years ago by ▴ 960
9
votes
6
replies
2.2k
views
Matching The Entries And Printing Data
sequence extraction id script
updated 11.5 years ago by 11k • written 11.5 years ago by ▴ 960
5
votes
7
replies
10k
views
Whole Genome Analysis Pipeline (Illumina)
illumina pipeline
updated 12.0 years ago by • 0 • written 12.0 years ago by ▴ 960
46 results • Page 1 of 1
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