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140
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Bacterial genome alignment with mauve
Bacteria mauve genome
7 days ago by rthapa ▴ 90
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1
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1.5k
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Comment: Comment: allele frequency from different read depths
2.9 years ago by rthapa ▴ 90
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1
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1.5k
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Comment: Comment: allele frequency from different read depths
2.9 years ago by rthapa ▴ 90
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5
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1.5k
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allele frequency from different read depths
allele depth frequency vcf read
updated 2.9 years ago by ▴ 420 • written 2.9 years ago by ▴ 90
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1.1k
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Comment: Comment: subset of paired end reads from bam file or fastq file of different depth
2.9 years ago by rthapa ▴ 90
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2
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1.1k
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subset of paired end reads from bam file or fastq file of different depth
depth ShortRead samtools read
2.9 years ago by rthapa ▴ 90
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3
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977
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Issue on downloading fastPHASE in Mac
fastPHASE
updated 3.0 years ago by 2.8k • written 3.7 years ago by ▴ 90
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1
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1.1k
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Comment: Comment: Fis, Ho and He calculation from Whole Genome Seq data
3.0 years ago by rthapa ▴ 90
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0
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569
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Discrepancy in structural variants results from mauve and MUM&Co
assembly structural variants mauve MUMandCo
updated 3.1 years ago by 20 • written 3.2 years ago by ▴ 90
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0
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647
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Identification of presence of genes by aligning the illumina reads to reference genome with Geneious
geneious alignment mapping
3.1 years ago by rthapa ▴ 90
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0
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413
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finding coverage of particular gene sequence from illumina short reads
coverage illumina
3.2 years ago by rthapa ▴ 90
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0
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5.6k
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Comment: C: Whole-genome alignment of two or more bacterial genomes - find structural varian
3.2 years ago by rthapa ▴ 90
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1
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3.7k
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Comment: C: mummer dot plot
3.2 years ago by rthapa ▴ 90
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1
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3.8k
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Comment: C: MUMmer plot visualization
3.2 years ago by rthapa ▴ 90
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1
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3.8k
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Comment: C: MUMmer plot visualization
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 90
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1
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3.8k
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Comment: C: MUMmer plot visualization
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 90
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7
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3.8k
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MUMmer plot visualization
MUMmer plot
updated 10 weeks ago by • 0 • written 3.2 years ago by ▴ 90
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0
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678
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MUMmer for structural variant call
MUMmer structural variants circlator
3.2 years ago by rthapa ▴ 90
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1
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1.6k
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Comment: C: Rotate circular contigs to replication initiator protein (ex. dnaA, repA)
3.2 years ago by rthapa ▴ 90
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1
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1.6k
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Comment: C: Rotate circular contigs to replication initiator protein (ex. dnaA, repA)
3.2 years ago by rthapa ▴ 90
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0
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601
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Assembly based structural variants detection
Assembly structural variants syri mumandco
3.2 years ago by rthapa ▴ 90
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0
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2.0k
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Comment: C: Mauve alignment vs samtools for SNP calling
3.2 years ago by rthapa ▴ 90
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1
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2.0k
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Comment: C: Mauve alignment vs samtools for SNP calling
3.2 years ago by rthapa ▴ 90
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1
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2.0k
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Comment: C: Mauve alignment vs samtools for SNP calling
3.2 years ago by rthapa ▴ 90
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0
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514
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Structural variants call from circular genome
Assembly structural variants bacterial genome
3.2 years ago by rthapa ▴ 90
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1
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913
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Comment: C: Assembly based structural variants call from bacterial genome
3.2 years ago by rthapa ▴ 90
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3
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913
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Assembly based structural variants call from bacterial genome
nanopore structural variants Assembly
3.2 years ago by rthapa ▴ 90
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0
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1.0k
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Comment: C: Hybrid Assembly approaches and advantage of having a circular genome assembly
3.2 years ago by rthapa ▴ 90
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0
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1.0k
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Comment: C: Structural variants detection from assembled genome from Nanopore sequence data
3.3 years ago by rthapa ▴ 90
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1
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1.0k
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Comment: C: Structural variants detection from assembled genome from Nanopore sequence data
3.3 years ago by rthapa ▴ 90
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4
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1.0k
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Structural variants detection from assembled genome from Nanopore sequence data
genome Assembly nanopore
updated 3.3 years ago by ★ 1.9k • written 3.3 years ago by ▴ 90
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1
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1.3k
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Comment: C: Running Mauve on circular genomes
3.3 years ago by rthapa ▴ 90
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1
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1.3k
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Comment: C: Running Mauve on circular genomes
3.3 years ago by rthapa ▴ 90
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1
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1.3k
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Comment: C: Running Mauve on circular genomes
3.3 years ago by rthapa ▴ 90
2
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5
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1.3k
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bacterial genome assembly output from canu
bacteria genome assembly canu
updated 3.3 years ago by ▴ 130 • written 3.3 years ago by ▴ 90
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5
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1.2k
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de novo genome assembly of bacterial genome
assembly genome bacteria
updated 3.3 years ago by 35k • written 3.4 years ago by ▴ 90
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1
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1.3k
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Comment: C: bacterial genome assembly output from canu
3.3 years ago by rthapa ▴ 90
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1
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956
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structural variants from mauve
structural variants mauve de novo assembly
updated 3.4 years ago by 20 • written 3.4 years ago by ▴ 90
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0
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1.2k
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Comment: C: de novo genome assembly of bacterial genome
3.4 years ago by rthapa ▴ 90
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1
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961
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Comment: C: bacterial genome assembly with canu and alignment with reference genome with mau
updated 3.4 years ago by 141k • written 3.4 years ago by ▴ 90
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3
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961
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bacterial genome assembly with canu and alignment with reference genome with mauve
Assembly canu mauve
3.4 years ago by rthapa ▴ 90
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0
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1.3k
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Comment: C: Are these good parameters for bacterial genome assembly?
3.4 years ago by rthapa ▴ 90
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0
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720
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Comment: C: bacterial genome assembly with nano pore sequence data
3.5 years ago by rthapa ▴ 90
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0
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720
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Comment: C: bacterial genome assembly with nano pore sequence data
3.5 years ago by rthapa ▴ 90
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3
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720
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bacterial genome assembly with nano pore sequence data
assembly nanopore
3.5 years ago by rthapa ▴ 90
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0
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786
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Vst estimation across different populations from copy number data
genome Copy number Vst
3.6 years ago by rthapa ▴ 90
1
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0
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816
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Comment: C: Obtain gene names for the SNPs from GWAS result
3.6 years ago by rthapa ▴ 90
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1
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2.4k
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Comment: C: mauve for contigs
3.6 years ago by rthapa ▴ 90
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1
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2.4k
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Comment: C: mauve for contigs
3.6 years ago by rthapa ▴ 90
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5
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2.4k
views
mauve for contigs
genome mauve
updated 3.6 years ago by ▴ 490 • written 3.6 years ago by ▴ 90
107 results • Page 1 of 3
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