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0
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How to sort graph based on fold change and instead of activated and suppressed, how to add up and downregulated in graph header?
clusterprofiler
13 months ago by sharmatina189059 ▴ 110
1
vote
1
reply
486
views
parse csv file
awk csv
updated 13 months ago by 43k • written 15 months ago by ▴ 110
1
vote
1
reply
604
views
Weighted coexpression network analysis
Networkanalyst RNASeq database STRING R
updated 16 months ago by 11k • written 16 months ago by ▴ 110
4
votes
6
replies
851
views
bash script error to copy files from multiple directories to one directory
bash
updated 16 months ago by 43k • written 16 months ago by ▴ 110
0
votes
3
replies
1.4k
views
How to extract multi-line protein sequences with Ids present in headers ?
PERL awk Sed
updated 2.1 years ago by ▴ 290 • written 4.1 years ago by ▴ 110
0
votes
5
replies
2.1k
views
can we retrieve protein sequences from the clusters of CD-hit?
CD-Hit protein sequences
updated 2.3 years ago by ▴ 10 • written 3.3 years ago by ▴ 110
0
votes
0
replies
499
views
how to plot genetic struture of bacterial genes?
bacteria plot gene
updated 2.7 years ago by 43k • written 2.7 years ago by ▴ 110
1
vote
0
replies
703
views
plot Roary results for oan genome analysis
R Roary
updated 10 months ago by 43k • written 2.8 years ago by ▴ 110
0
votes
0
replies
477
views
Operon Mapping
SLING operon Multigeneblast
2.9 years ago by sharmatina189059 ▴ 110
0
votes
6
replies
2.8k
views
Calculate Dn/Ds for nucleotide sequences using codeml, hyphy or SNAP.
Paml codeml SNAP hyphy
3.2 years ago by sharmatina189059 ▴ 110
0
votes
0
replies
540
views
codeml.txt file isnot generating.
Codeml paml dn/ds
3.2 years ago by sharmatina189059 ▴ 110
0
votes
0
replies
786
views
How to get variation data from MSA file generated using ClustalW for protein sequences?
clustalw MSA variation
updated 3.3 years ago by 20 • written 3.3 years ago by ▴ 110
6
votes
5
replies
1.2k
views
how to unique a file row-wise?
awk perl sed linux
updated 3.3 years ago by ★ 4.3k • written 3.3 years ago by ▴ 110
0
votes
2
replies
873
views
How to read a multiple sequence alignment file?
Multiple-sequence-alignment
updated 11 months ago by 43k • written 3.3 years ago by ▴ 110
4
votes
2
replies
909
views
How Can I plot this data in a heatmap?
R Heatmap Pathways Uniprot
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 110
0
votes
4
replies
859
views
Mapping a draft sequence to a finished sequence using MUMmer.
MUMmer
3.5 years ago by sharmatina189059 ▴ 110
6
votes
10
replies
3.5k
views
Retrieve multi-line fasta sequences using list of locus tag
sequence
updated 3.7 years ago by • 0 • written 5.9 years ago by ▴ 110
0
votes
2
replies
739
views
why this code is not deleting entries from mysql table?
php mysql
updated 3.8 years ago by 20 • written 3.9 years ago by ▴ 110
2
votes
4
replies
1.0k
views
One gene shows alignment with core sequences as well as with accessory gene sequences at 50% identity?
Pan-Genome with BPGA BPGA
updated 4.1 years ago by ★ 27k • written 4.1 years ago by ▴ 110
0
votes
3
replies
640
views
Why blast with same query sequence shows two different query length?
blast
updated 4.1 years ago by 141k • written 4.1 years ago by ▴ 110
0
votes
6
replies
874
views
Why Genome coverage is missing for some assemblies?
next-gen Genome coverage
updated 4.1 years ago by 3.6k • written 4.1 years ago by ▴ 110
0
votes
4
replies
815
views
automate command using bash or perl script?
assembly RAST PERL BASH
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 110
0
votes
4
replies
930
views
Setting up local blast in webserver
BLAST PHP and MYSQL
4.3 years ago by sharmatina189059 ▴ 110
0
votes
1
reply
1.7k
views
Pathway annotation using sequence alignment
alignment KEGG BLASTKOALA
updated 4.9 years ago by 20 • written 6.5 years ago by ▴ 110
0
votes
0
replies
1000
views
Pan-genome using BPGA
genome
4.9 years ago by sharmatina189059 ▴ 110
1
vote
2
replies
1.3k
views
Discriminating ortholog and paralogs using Cd-hit
genome gene
5.2 years ago by sharmatina189059 ▴ 110
0
votes
0
replies
706
views
What does 16/304 MIC value mean?
Life sciences
5.3 years ago by sharmatina189059 ▴ 110
0
votes
0
replies
692
views
How to draw gene architecture of bacterial genome using specific coordinates?
genome
5.4 years ago by sharmatina189059 ▴ 110
1
vote
7
replies
2.1k
views
Is there a tool for making a synteny blocks of a gene with its downstream and upstream genes using a bacterial genome sequence?
genome
updated 5.4 years ago by ★ 3.0k • written 5.4 years ago by ▴ 110
4
votes
12
replies
4.9k
views
how to change fasta headers?
sequence
updated 5.6 years ago by ▴ 380 • written 5.6 years ago by ▴ 110
8
votes
9
replies
3.1k
views
how to download all protein sequnces of a bacteria using ncbi ftp site?
ncbi
updated 5.6 years ago by 21k • written 5.6 years ago by ▴ 110
1
vote
3
replies
2.1k
views
How to use genewise using pubmed.mineR ?
R
5.7 years ago by sharmatina189059 ▴ 110
1
vote
11
replies
2.4k
views
Row and coloumn names do not display on x and Y axis in heatmaply.
heatmap
updated 5.8 years ago by 47k • written 5.8 years ago by ▴ 110
0
votes
3
replies
1.3k
views
Compacted de-bruijn graph
assembly
updated 5.9 years ago by 5.8k • written 5.9 years ago by ▴ 110
0
votes
6
replies
1.7k
views
What is the difference between complete genome and chromosome at NCBI? Why these two terms have been mentioned differently?
NCBI
5.9 years ago by sharmatina189059 ▴ 110
4
votes
6
replies
1.4k
views
Query regarding RCSBPDB
RCSB-PDB
updated 6.0 years ago by ▴ 20 • written 6.6 years ago by ▴ 110
0
votes
2
replies
1.4k
views
STRING database threshold value
genome STRING database
updated 6.0 years ago by 20 • written 6.2 years ago by ▴ 110
0
votes
2
replies
1.0k
views
Why one genbank entry has multiple CDS?
genome
updated 6.3 years ago by 10k • written 6.3 years ago by ▴ 110
0
votes
1
reply
2.8k
views
Working with PPI using STRING database
string database R
6.3 years ago by sharmatina189059 ▴ 110
1
vote
3
replies
2.7k
views
Query regarding BLASTKOALA (KEGG) for pathway annotation
BLASTKOALA Pathway annotation
updated 6.3 years ago by ★ 4.0k • written 6.5 years ago by ▴ 110
3
votes
4
replies
4.9k
views
creating a heatmap with R and retrieve cluster data from dendogram
R
updated 6.4 years ago by 7.5k • written 6.4 years ago by ▴ 110
0
votes
0
replies
1.2k
views
Retrieving biochemical reaction using a list of EC numbers .
EC numbers bacterial genome annotation
6.5 years ago by sharmatina189059 ▴ 110
2
votes
12
replies
1.4k
views
EC file parsing
bash shell
updated 13 months ago by 43k • written 6.5 years ago by ▴ 110
0
votes
1
reply
1.2k
views
Query to retrieve pathway data of an organism using BioCyc
Biocyc API Data mining
updated 6.5 years ago by 20 • written 6.5 years ago by ▴ 110
2
votes
8
replies
2.1k
views
Retrieve data from Excel sheet for Mysql table
MySQL Excel Perl PHP
updated 6.5 years ago by 141k • written 6.5 years ago by ▴ 110
0
votes
0
replies
2.4k
views
Pathway annotation using KEGG
KEGG
6.5 years ago by sharmatina189059 ▴ 110
0
votes
0
replies
1.7k
views
KEGG BLASTKOALA parameters
BLASTKOALA
6.5 years ago by sharmatina189059 ▴ 110
0
votes
1
reply
1.5k
views
Query regarding KEGG database
KEGG Interacting pathways
6.5 years ago by sharmatina189059 ▴ 110
6
votes
9
replies
2.0k
views
KEGG data parse
R data parsing
updated 6.6 years ago by ★ 1.5k • written 6.6 years ago by ▴ 110
2
votes
2
replies
1.7k
views
problem in fetching data using excel
genome KEGG data
updated 6.6 years ago by ★ 1.2k • written 6.6 years ago by ▴ 110
66 results • Page 1 of 2
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