STRING database threshold value
Dear all I have some protein sequences and I want to get Protein-protein interaction using STRING database. From string API, I have downloaded all the COG.links.detailed.v10.5.txt.gz (209.2 Mb) which contains all the scores. But I have those having medium score threshold only. Is there any option to do that or any script. I have interactions like this.
575584.HMPREF0010_00003 575584.HMPREF0010_00012 168 0 0 0 0 0 0 168
575584.HMPREF0010_00003 575584.HMPREF0010_00004 640 0 0 0 0 0 0 640
575584.HMPREF0010_00003 575584.HMPREF0010_00013 168 0 0 0 0 0 0 168
575584.HMPREF0010_00003 575584.HMPREF0010_00010 180 0 0 0 0 0 0 180
575584.HMPREF0010_00003 575584.HMPREF0010_00006 477 0 0 0 0 0 0 477
575584.HMPREF0010_00003 575584.HMPREF0010_00009 180 0 0 0 0 0 0 180
575584.HMPREF0010_00003 575584.HMPREF0010_00005 477 0 0 0 0 0 0 477
575584.HMPREF0010_00003 575584.HMPREF0010_00011 168 0 0 0 0 0 0 168
575584.HMPREF0010_00003 575584.HMPREF0010_00007 285 0 0 0 0 0 0 285
575584.HMPREF0010_00003 575584.HMPREF0010_00008 200 0 0 0 0 0 0 200
I want to retrive only medium threshold values.
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sharmatina189059 •
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sharmatina189059 •
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How the medium threshold values relate to the table you downloaded?
The last column is the combined score values and I wanted to get all the interacting partners having medium threshold using STRING database.