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499
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Comment: Comment: Normalization on top of TMM scaled data
6 months ago by weixiaokuan ▴ 140
1
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2
replies
499
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Normalization on top of TMM scaled data
RNA-Seq edgeR Normalization
6 months ago by weixiaokuan ▴ 140
9
votes
7
replies
1.6k
views
6 follow
Can BWA (mem) detect longer deletions?
alignment bwa
updated 6 months ago by 20k • written 8 months ago by ▴ 140
1
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0
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1.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
7 months ago by weixiaokuan ▴ 140
0
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2
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1.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
8 months ago by weixiaokuan ▴ 140
0
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1
reply
692
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Comment: Comment: How to read Varscan VCF output in column "Cons"?
9 months ago by weixiaokuan ▴ 140
0
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3
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692
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How to read Varscan VCF output in column "Cons"?
VCF Varscan
updated 9 months ago by ★ 2.1k • written 9 months ago by ▴ 140
0
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2
replies
674
views
How to map genomic sequence to protein functions or domains?
GRange Genome Ensembldb annotation
updated 12 months ago by 6.4k • written 12 months ago by ▴ 140
0
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1
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1.2k
views
Comment: Comment: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
15 months ago by weixiaokuan ▴ 140
3
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3
replies
1.2k
views
How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
mac bowtie2 bwa m2
updated 15 months ago by 142k • written 15 months ago by ▴ 140
0
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0
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754
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Comment: Comment: Any R package for pathway upstream regulator analysis?
16 months ago by weixiaokuan ▴ 140
0
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2
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754
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Any R package for pathway upstream regulator analysis?
network-analysis Pathway-Analysis IPA
updated 16 months ago by 43k • written 16 months ago by ▴ 140
1
vote
1
reply
979
views
Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
sleuth kallisto
updated 17 months ago by ★ 6.0k • written 17 months ago by ▴ 140
0
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1
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724
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Comment: Comment: How to use Sleuth for Kallisto results in one directory?
17 months ago by weixiaokuan ▴ 140
2
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2
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724
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How to use Sleuth for Kallisto results in one directory?
sleuth kallisto
updated 17 months ago by ★ 6.0k • written 17 months ago by ▴ 140
12
votes
28
replies
9.3k
views
illumina EPIC array support by R packages?
methylation minfi champ rnbeads
updated 4.9 years ago by 8.2k • written 7.9 years ago by ▴ 140
0
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0
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734
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significance evaluation of Motif identified by SeqLogo
alignment sequence motif
5.4 years ago by weixiaokuan ▴ 140
0
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3
replies
2.7k
views
bioawk output in original fastq format
bioawk fastq
updated 5.5 years ago by ▴ 460 • written 6.7 years ago by ▴ 140
0
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1
reply
3.4k
views
Comment: C: RNA-Seq without replicate using Kallisto
7.6 years ago by weixiaokuan ▴ 140
0
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1
reply
3.4k
views
Comment: C: RNA-Seq without replicate using Kallisto
7.6 years ago by weixiaokuan ▴ 140
0
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2
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3.4k
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Comment: C: RNA-Seq without replicate using Kallisto
7.6 years ago by weixiaokuan ▴ 140
0
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1
reply
3.4k
views
Comment: C: RNA-Seq without replicate using Kallisto
7.6 years ago by weixiaokuan ▴ 140
0
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0
replies
3.4k
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Comment: C: RNA-Seq without replicate using Kallisto
7.6 years ago by weixiaokuan ▴ 140
1
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11
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3.4k
views
RNA-Seq without replicate using Kallisto
RNA-Seq Kallisto
7.6 years ago by weixiaokuan ▴ 140
1
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0
replies
5.5k
views
Comment: C: WGCNA maxBlockSize limit
7.8 years ago by weixiaokuan ▴ 140
0
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0
replies
5.5k
views
Comment: C: WGCNA maxBlockSize limit
7.8 years ago by weixiaokuan ▴ 140
0
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0
replies
5.5k
views
Comment: C: WGCNA maxBlockSize limit
7.8 years ago by weixiaokuan ▴ 140
0
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1
reply
5.5k
views
Comment: C: WGCNA maxBlockSize limit
7.8 years ago by weixiaokuan ▴ 140
0
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1
reply
5.5k
views
Comment: C: WGCNA maxBlockSize limit
7.8 years ago by weixiaokuan ▴ 140
1
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10
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5.5k
views
WGCNA maxBlockSize limit
WGCNA
7.8 years ago by weixiaokuan ▴ 140
1
vote
1
reply
9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.8 years ago by weixiaokuan ▴ 140
1
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1
reply
9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.8 years ago by weixiaokuan ▴ 140
1
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1
reply
9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.8 years ago by weixiaokuan ▴ 140
0
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2
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9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.9 years ago by weixiaokuan ▴ 140
0
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0
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2.1k
views
Comment: C: identify associated genes with methylation bumps
7.9 years ago by weixiaokuan ▴ 140
2
votes
2
replies
2.1k
views
identify associated genes with methylation bumps
methylation illumina epic minfi ChAMP RnBeads
updated 7.9 years ago by 13k • written 7.9 years ago by ▴ 140
0
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1
reply
9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.9 years ago by weixiaokuan ▴ 140
0
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1
reply
9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.9 years ago by weixiaokuan ▴ 140
0
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2
replies
9.3k
views
Comment: C: illumina EPIC array support by R packages?
7.9 years ago by weixiaokuan ▴ 140
0
votes
1
reply
2.9k
views
Comment: Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
2
votes
4
replies
2.9k
views
Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
RNA-Seq DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
0
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0
replies
5.0k
views
Comment: Comment: DESeq2: different log2FC results when using subset of data
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
9
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5
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5.0k
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DESeq2: different log2FC results when using subset of data
RNA-Seq DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
0
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1
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15k
views
Comment: Comment: which normalized counts is better from DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
21
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6
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15k
views
which normalized counts is better from DESeq2
RNA-Seq DESeq2
updated 17 months ago by 43k • written 8.9 years ago by ▴ 140
0
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0
replies
15k
views
Comment: C: which normalized counts is better from DESeq2
8.9 years ago by weixiaokuan ▴ 140
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