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identify associated genes with methylation bumps

Hi,

I have run through methylation array (illumina EPIC) pipeline using minfi or ChAMP. Now, I have obtained, DMP and DMR. I would like to annotate these locus, regions with gene information. For DMP, it's simple I just need to add gene info to each probe. However, for DMR, do you guys know a simple solution to identify all the associated genes with a DMR? I know I may write code to get those genes but if any package/function available, it will be very helpful. Thank you. -Xiaokuan

methylation illumina epic minfi champ rnbeads
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updated by igor igor • written by weixiaokuan weixiaokuan

1 answer

There are a few packages available for annotation of regions, such as:

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written by igor igor

Thank you igor. I'll give them a try. -Xiaokuan

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written by weixiaokuan weixiaokuan

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