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80
votes
21
replies
37k
views
17 follow
How to know that your RNA-seq is stranded or not?
RNA-Seq
updated 5 months ago by • 0 • written 10.0 years ago by ▴ 660
0
votes
4
replies
3.3k
views
How to mach gene names and source (lincRNA, antisense, protein_coding,....) with specific list of genes id?
next-gen RNA-Seq R
updated 2.1 years ago by ▴ 350 • written 9.4 years ago by ▴ 660
8
votes
7
replies
10k
views
How to get just protein_coding genes using biomart in R
R sequencing rna-seq
updated 6 months ago by • 0 • written 8.4 years ago by ▴ 660
11
votes
3
replies
11k
views
Could Any One Explain What Information Inside Sam File?
sam
updated 4.0 years ago by 20 • written 10.1 years ago by ▴ 660
2
votes
1
reply
4.1k
views
How to print (show) all results in R screen
rna-seq R
updated 4.4 years ago by 43k • written 10.0 years ago by ▴ 660
0
votes
1
reply
1.4k
views
RepeatFamily in Mouse repeatMaskerfile
R genome gene sequencing
updated 7.1 years ago by 20 • written 7.3 years ago by ▴ 660
5
votes
5
replies
1.8k
views
How to keep the gene id with highly FPKM.
R
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by ▴ 660
0
votes
0
replies
1.5k
views
How to visulize SNPs and repeated sequence for certain mouse gene in the promoter region
genome sequencing gene SNP
7.2 years ago by M K ▴ 660
8
votes
3
replies
58k
views
what is the difference between single end and paired end in sequencing
RNA-Seq
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 660
1
vote
0
replies
2.8k
views
D-value instead of P-value in large sample size
R RNA-Seq genome
7.5 years ago by M K ▴ 660
0
votes
1
reply
1.9k
views
Is there any way to find repetitive DNA in the promoter region for specific gene using bio conductor
R next-gen sequence gene
updated 7.5 years ago by 5.7k • written 7.5 years ago by ▴ 660
1
vote
17
replies
2.1k
views
Question about potentially mutation causing protein
gene genome blast
7.5 years ago by M K ▴ 660
2
votes
6
replies
2.7k
views
Question about checking the regression assumptions?
R
7.5 years ago by M K ▴ 660
3
votes
3
replies
1.8k
views
How to calculate the number of genes has specific characteristics on it?
R
7.5 years ago by M K ▴ 660
10
votes
6
replies
11k
views
how to return the componenets from PCA back to original variables?
R
updated 7.6 years ago by 4.8k • written 7.6 years ago by ▴ 660
4
votes
6
replies
16k
views
Nested if-else statement in R
R
updated 7.6 years ago by 82k • written 7.6 years ago by ▴ 660
0
votes
0
replies
1.7k
views
Helping with heatmap
R
7.6 years ago by M K ▴ 660
0
votes
2
replies
2.5k
views
How can I get the repbase and the repeatMasker versions that used in UCSC Web browser
Assembly genome UCSC RepeatMasker repeats
updated 7.9 years ago by 23k • written 7.9 years ago by ▴ 660
2
votes
2
replies
1.9k
views
Cuffldiff is almost done, but it seems to be hanging at "99% complete"
RNA-Seq
updated 8.0 years ago by • 0 • written 10.0 years ago by ▴ 660
3
votes
2
replies
2.5k
views
What preliminary steps should I do before checking the quality of sequence for RNA-seq
RNA-Seq
updated 8.2 years ago by 20 • written 10.0 years ago by ▴ 660
4
votes
1
reply
2.3k
views
Significant of LASSO regression parameters
R
updated 21 months ago by 43k • written 8.2 years ago by ▴ 660
1
vote
2
replies
1.8k
views
Regression analysis with high dimensional predictors
next-gen R
updated 21 months ago by 43k • written 8.3 years ago by ▴ 660
0
votes
5
replies
2.9k
views
Using multiple regression analysis for genetic data
R
updated 21 months ago by 43k • written 8.4 years ago by ▴ 660
0
votes
3
replies
4.4k
views
how to convert R contingency table to a matrix that will be used to merge with other matrix
R
updated 21 months ago by 43k • written 8.4 years ago by ▴ 660
5
votes
6
replies
1.4k
views
Help with using expression in gsub function
R
updated 2.7 years ago by 43k • written 8.5 years ago by ▴ 660
11
votes
6
replies
6.1k
views
Function for removing low expressed genes
R
updated 21 months ago by 43k • written 8.5 years ago by ▴ 660
0
votes
4
replies
2.7k
views
Classification of Repetitive DNA with more details
genome sequencing
updated 20 months ago by 43k • written 8.6 years ago by ▴ 660
0
votes
2
replies
1.1k
views
Manipulating gene file
R
updated 19 months ago by 43k • written 8.6 years ago by ▴ 660
1
vote
3
replies
2.2k
views
Cufflinks Crashes Because Of Mitochondrial Rna Abundance
cufflinks rna
updated 8.9 years ago by ▴ 10 • written 10.1 years ago by ▴ 660
1
vote
5
replies
2.8k
views
Any difference between biomaRt package and biomart tab on the website?
gene R Assembly sequencing
updated 22 months ago by 43k • written 8.9 years ago by ▴ 660
19
votes
7
replies
26k
views
how to retrieve mouse (mm10) gene information from Ensemble using Biomart inR
gene R
updated 16 months ago by 43k • written 8.9 years ago by ▴ 660
1
vote
3
replies
2.2k
views
Warning message in findOverlap function in R
R genome sequence
updated 22 months ago by 43k • written 9.1 years ago by ▴ 660
4
votes
4
replies
7.1k
views
R code to calculate total number of bp from gene range
R
updated 24 months ago by 43k • written 9.2 years ago by ▴ 660
2
votes
5
replies
6.7k
views
Error with reading zipped file using the R function read.table.
R
updated 24 months ago by 43k • written 9.2 years ago by ▴ 660
1
vote
10
replies
3.6k
views
R code to match the positions for repetitive elements in rmsk file for mouse mm10 with mouse genome
next-gen R RNA-Seq
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 660
0
votes
8
replies
3.6k
views
How to split the Repetitive DNA file (rmsk) for human according to class and family using R
sequence genome next-gen
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 660
2
votes
8
replies
8.2k
views
How to convert GTF format to BED format?
next-gen-sequencing RNA-Seq
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 660
1
vote
1
reply
2.0k
views
Looking for tutorials or workshops about repetitive element analysis in human genome.
next-gen-sequencing RNA-Seq genome
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 660
3
votes
9
replies
6.3k
views
How to remove Mitochondrial genes from Human annotation file (.GTF)?
next-gen-sequencing RNA-Seq R
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 660
5
votes
10
replies
7.2k
views
What is the better transformation we should use to transform the expression level?
next-gen RNA-Seq R
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 660
18
votes
29
replies
17k
views
7 follow
What is the best way to match gene id with gene name.
RNA-Seq R
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 660
1
vote
12
replies
3.8k
views
How to identify novel antisense?
RNA-Seq
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 660
3
votes
7
replies
13k
views
how to remove matching Gene ID from data frame in R
R
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 660
3
votes
8
replies
6.3k
views
How to extract sense and antisense read counts from mapping file (.bam) for RNA-seq data set
next-gen RNA-Seq R
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 660
12
votes
10
replies
19k
views
6 follow
how to use log transformation with read count data?
R
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 660
0
votes
3
replies
4.4k
views
Difference between Gene Models (Annotation files .gtf) for human (hg19)
RNA-Seq genome
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 660
9
votes
5
replies
7.5k
views
What the index means in illumina RNA-seq data file?
next-gen sequencing RNA-Seq
updated 2.3 years ago by 43k • written 9.8 years ago by ▴ 660
60
votes
6
replies
27k
views
What is the difference between a Read and a Fragment in RNA-seq?
rna-seq sequencing fragment read insert
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 660
1
vote
2
replies
2.0k
views
How To Calculate Read Count For Antisense Study?
read
updated 9.9 years ago by 20 • written 10.1 years ago by ▴ 660
17
votes
13
replies
37k
views
GTF annotation file for Human
RNA-Seq next-gen
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 660
59 results • Page 1 of 2
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