RepeatFamily in Mouse repeatMaskerfile
Hi All,
I Identified the repetitive sequences in 10kbp promoter region in mouse.I used GRanges package in R to create genomic ranges for both mouse repeatMasker file and 10kbp promoter. Then I used findovelap function in GRanges to find overlapping regions and I got them. Now, I want to add the base pairs for certain repeats falling in the promoter region of specific genes
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It is not clear what your question is. It seems you already have defined the ranges for promoters and intersected them with repeats, right? That should result in a set of bases