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2
votes
3
replies
969
views
inter and intra-sample variance in 10X visium spatial transcriptome data
transcriptome cell single spatial
updated 19 months ago by 142k • written 2.2 years ago by ▴ 260
0
votes
0
replies
969
views
Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
updated 19 months ago by 142k • written 2.2 years ago by ▴ 260
0
votes
1
reply
1.2k
views
Comment: Comment: unmapped reads from 10X visium spaceranger bam file
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 260
0
votes
1
reply
1.2k
views
Comment: Comment: unmapped reads from 10X visium spaceranger bam file
2.2 years ago by Omics data mining ▴ 260
0
votes
5
replies
1.2k
views
unmapped reads from 10X visium spaceranger bam file
transcriptome 10X spatial visium
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 260
6
votes
4
replies
1.6k
views
gene set enrichment in clusterprofiler
clusterprofiler gene enrichment analysis set
updated 2.2 years ago by ▴ 20 • written 2.2 years ago by ▴ 260
0
votes
0
replies
1.4k
views
Comment: Comment: gseGO for multiple groups
2.2 years ago by Omics data mining ▴ 260
0
votes
2
replies
1.4k
views
gseGO for multiple groups
clusterProfiler gseKEGG gseGO
2.2 years ago by Omics data mining ▴ 260
1
vote
2
replies
1.3k
views
Upset plot in ComplexHeatmap
ComplexHeatmap Upsetplot
updated 2.3 years ago by ★ 16k • written 2.3 years ago by ▴ 260
0
votes
1
reply
833
views
impulseDE2 input
normalized count input raw impulseDE2
updated 2.3 years ago by ▴ 200 • written 2.3 years ago by ▴ 260
0
votes
1
reply
1.1k
views
Comment: Comment: spatial 10X visum analysis
2.4 years ago by Omics data mining ▴ 260
0
votes
1
reply
5.4k
views
Comment: Comment: How to compare two Seurat object (sample) in order to find top markers?
2.4 years ago by Omics data mining ▴ 260
0
votes
3
replies
1.1k
views
spatial 10X visum analysis
spatial 10X visium
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 260
0
votes
0
replies
7.4k
views
Comment: Comment: conversion of ensembl to gene_symbol in seurat
2.4 years ago by Omics data mining ▴ 260
0
votes
2
replies
7.4k
views
conversion of ensembl to gene_symbol in seurat
Seurat conversion spatial transcriptome
2.4 years ago by Omics data mining ▴ 260
0
votes
0
replies
1.8k
views
Comment: Comment: UMI extraction from 10X visium spatial transcriptome data
2.4 years ago by Omics data mining ▴ 260
2
votes
4
replies
1.8k
views
UMI extraction from 10X visium spatial transcriptome data
umi_tools UMI spatial-transcriptome
updated 10 months ago by 43k • written 2.4 years ago by ▴ 260
0
votes
0
replies
1.8k
views
Comment: Comment: UMI extraction from 10X visium spatial transcriptome data
updated 2.4 years ago by 142k • written 2.4 years ago by ▴ 260
0
votes
0
replies
514
views
Patient-to-patient similarities network
SNFtools multi omics
3.2 years ago by Omics data mining ▴ 260
0
votes
0
replies
570
views
Error running gene expression based ProTINA
ProTINA Time-Series gene-expression
updated 11 months ago by 43k • written 3.4 years ago by ▴ 260
0
votes
2
replies
973
views
Selection of SNPs after imputation
gwas imputation
updated 3.7 years ago by ▴ 140 • written 3.7 years ago by ▴ 260
0
votes
0
replies
1.1k
views
GetPileupSummaries for each chromosome
GATK
3.8 years ago by Omics data mining ▴ 260
0
votes
1
reply
1.2k
views
Comment: C: minimum reads for the splicing event analysis ?
3.9 years ago by Omics data mining ▴ 260
1
vote
3
replies
1.2k
views
minimum reads for the splicing event analysis ?
alternative splicing isoform expression
updated 3.9 years ago by 15k • written 3.9 years ago by ▴ 260
0
votes
0
replies
680
views
include vcf header
varscan
4.2 years ago by Omics data mining ▴ 260
1
vote
0
replies
948
views
TCGA data , filtration and normalization
genomics omics TCGA normalization
4.3 years ago by Omics data mining ▴ 260
2
votes
6
replies
4.2k
views
error while running vcf2maf
vcf2maf SNP rnaseq
updated 4.3 years ago by ▴ 180 • written 5.8 years ago by ▴ 260
0
votes
0
replies
1.5k
views
Comment: A: input format file for DiscoSNP software run
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 260
0
votes
0
replies
4.8k
views
Answer: A: Snp Discovery From De Novo Assembly
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 260
0
votes
1
reply
893
views
TCGA array expression and rnaseq expression batch correction
tcga rnaseq expression
4.6 years ago by Omics data mining ▴ 260
2
votes
2
replies
1.4k
views
Input for VariantsToBinaryPed
GATK plink
updated 4.6 years ago by 10k • written 5.9 years ago by ▴ 260
0
votes
0
replies
1.3k
views
Multi samples (Normal and Tumor) somatic SNPs identification
GATK SNP VCF mutlisamplevcf whole-exom
4.6 years ago by Omics data mining ▴ 260
0
votes
1
reply
824
views
multi sample vcf to data matrix
VCF SNP GATK
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 260
1
vote
0
replies
3.2k
views
Comment: C: TCGA survival data classification
4.6 years ago by Omics data mining ▴ 260
2
votes
2
replies
3.2k
views
TCGA survival data classification
TCGA survival
updated 4.7 years ago by 87k • written 4.7 years ago by ▴ 260
0
votes
3
replies
2.4k
views
ConsensusClusterPlus for small sample
ConsensusClusterPlus
updated 5.1 years ago by ▴ 400 • written 5.3 years ago by ▴ 260
0
votes
1
reply
1.3k
views
Answer: A: Merging variant calls of whole exome and RNA-seq
5.1 years ago by Omics data mining ▴ 260
0
votes
0
replies
872
views
Answer: C: Error of Netics : Multi omics intergration tool
5.1 years ago by Omics data mining ▴ 260
0
votes
1
reply
872
views
Error of Netics : Multi omics intergration tool
Netics multi omics integration
updated 5.1 years ago by 47k • written 5.2 years ago by ▴ 260
0
votes
2
replies
2.5k
views
Survival analysis based on gene expression
Survival gene expression
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 260
0
votes
0
replies
2.4k
views
Comment: C: ConsensusClusterPlus for small sample
5.3 years ago by Omics data mining ▴ 260
2
votes
2
replies
7.3k
views
genlist for clusterprofiler
clusterprofiler R bioconductor
updated 5.5 years ago by 11k • written 6.1 years ago by ▴ 260
0
votes
1
reply
1.8k
views
cytoscape subnetwork from WGCNA based modules
cytoscape TieDie subnetwork
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: TCGA SNP data
5.8 years ago by Omics data mining ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: TCGA SNP data
5.8 years ago by Omics data mining ▴ 260
0
votes
5
replies
1.9k
views
TCGA SNP data
TCGA maf2vcf SNPs PAAD
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 260
4
votes
2
replies
3.9k
views
how to create .gzi index
rnaseq genome
updated 5.8 years ago by ▴ 450 • written 5.8 years ago by ▴ 260
0
votes
0
replies
3.9k
views
Comment: C: how to create .gzi index
5.8 years ago by Omics data mining ▴ 260
1
vote
0
replies
1.3k
views
Comment: C: Immunogenic signature in genesset
5.8 years ago by Omics data mining ▴ 260
2
votes
2
replies
1.3k
views
Immunogenic signature in genesset
immunogenic signatures MSigDB RNASeq
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 260
161 results • Page 2 of 4
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