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Error of Netics : Multi omics intergration tool

Hello everyone,

I am running Netics code to prioritize genes in my project. Basically, I am working on PDAC cancer . I have transcriptome and mutation data. I am trying to run 'NETICS' code available at https://github.com/cbg-ethz/netics.

As a very first step, I am trying to run test data given along with netics folder. But during run time, it is giving me error: 

Error using fdr
Too many output arguments.

Error in netics_fun>read_diff_expr (line 173)
        [~,~,pval_all] = fdr(pval_all,0.05);

Error in netics_fun (line 91)
        diff_expr_genes = read_diff_expr( filenameRNA, filenamePR );

ICan anyone help me here to fix this issue ??

Thank you

netics multi omics integration
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updated by WouterDeCoster WouterDeCoster • written by Omics data mining Omics data mining

1 answer

It worked for me. I downloaded fdr function from https://brainder.org/2011/09/05/fdr-corrected-fdr-adjusted-p-values/ I missed this information earlier. Test run is working now.

Thanks

• 0 views • link
written by Omics data mining Omics data mining

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