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407
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cnetplot enrichment graph to cytoscape
clusterprofiler cnetplot enrichplot
11 months ago by Omics data mining ▴ 260
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1
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644
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Comment: Comment: Spatial transcriptome analysis
11 months ago by Omics data mining ▴ 260
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0
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1.6k
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from seurat to scanpy data conversion and re-scaling
transctiptome eurat scanpy conversion spatial
11 months ago by Omics data mining ▴ 260
1
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1
reply
968
views
Right assay and slot for the extraction of normalized data after "sct normalization" and "anchor based integration"
single normalization integration cell sct anchor seurat based
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 260
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1
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477
views
pipeline for correlation of RNASeq and Methylation data
rnaseq methylation correlation normalization data
updated 12 months ago by ★ 2.9k • written 12 months ago by ▴ 260
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1
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579
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Customizable pvalue scales in clusterprofiler
clusterprofiler
updated 12 months ago by 13k • written 12 months ago by ▴ 260
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0
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870
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Comment: Comment: clusterprofiler dotplot facet_grid plot based on ONTOLOGY
12 months ago by Omics data mining ▴ 260
2
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2
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870
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clusterprofiler dotplot facet_grid plot based on ONTOLOGY
dotplot clusterprofiler facet_grid
12 months ago by Omics data mining ▴ 260
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0
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335
views
normalization and integration of two independent single cell cohorts
single-cell batch-effect normalization
updated 12 months ago by 43k • written 12 months ago by ▴ 260
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1
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1.1k
views
normalized score for SpatialFeaturePlot
Spatial Transcriptome normalization integration Seurat
updated 13 months ago by ★ 1.8k • written 13 months ago by ▴ 260
2
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1
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3.2k
views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
13 months ago by Omics data mining ▴ 260
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0
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645
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Comment: Comment: Visualization of Enrichment score for spatial 10x visium samples
14 months ago by Omics data mining ▴ 260
1
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2
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645
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Visualization of Enrichment score for spatial 10x visium samples
visium transctiptome 10x enrichment scores spatial
14 months ago by Omics data mining ▴ 260
1
vote
2
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622
views
deconvolution of spatial transcriptome
deconvolution spatial transcriptome
updated 15 months ago by ★ 3.9k • written 15 months ago by ▴ 260
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1
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1.7k
views
change color and scale in SpatialFeaturePlot
clustering Seurat spatial-transcriptome
updated 15 months ago by 43k • written 15 months ago by ▴ 260
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0
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964
views
error plotting spatial data in scanpy
scanpy spatial-transcriptome
updated 15 months ago by 43k • written 15 months ago by ▴ 260
2
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0
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518
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Input at BINDetect step (for TOBIAS pipeline) with multiple files
differential ATAC-Seq tobias motifs
15 months ago by Omics data mining ▴ 260
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0
replies
3.2k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
15 months ago by Omics data mining ▴ 260
0
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1
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3.2k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
15 months ago by Omics data mining ▴ 260
0
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1
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3.2k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
16 months ago by Omics data mining ▴ 260
1
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6
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3.2k
views
error in pipeline installation dependent on numpy version 1.18.5
cnn numpy imaging python
15 months ago by Omics data mining ▴ 260
3
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8
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6.3k
views
bait interval list for picard collecthsmetrices
picard alignment exome
12 months ago by Omics data mining ▴ 260
1
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1
reply
513
views
DESeq2 with multiple conditional data
multi differential DESeq2 genes factor
updated 17 months ago by 13k • written 17 months ago by ▴ 260
8
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6
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3.2k
views
How to include spatial coordinate data into anndata within scanpy
scanpy visium transcriptome spatial 10X
updated 3 months ago by • 0 • written 19 months ago by ▴ 260
1
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1
reply
496
views
Batch effect of sequencing data that were sequenced in different locations
effect batch DESeq2
updated 18 months ago by 82k • written 18 months ago by ▴ 260
0
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0
replies
427
views
Error plotting the markers in sc.pl.rank_genes_groups_dotplot
scanpy trasncriptome seurat spatial
19 months ago by Omics data mining ▴ 260
0
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1
reply
483
views
identification of overlapped, proximal and distal gene for peak regions
chip idenfication peak seq gene
updated 19 months ago by ▴ 410 • written 19 months ago by ▴ 260
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0
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1.1k
views
Comment: Comment: nested elements in bed file using awk
19 months ago by Omics data mining ▴ 260
0
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0
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563
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Comment: Comment: cluster identification and DEGs in single cell data
19 months ago by Omics data mining ▴ 260
1
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2
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563
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cluster identification and DEGs in single cell data
deg cluster seurat analysis
19 months ago by Omics data mining ▴ 260
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2
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1.1k
views
Comment: Comment: nested elements in bed file using awk
19 months ago by Omics data mining ▴ 260
3
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6
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1.1k
views
nested elements in bed file using awk
coordinates bedops genome awk
19 months ago by Omics data mining ▴ 260
0
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1
reply
929
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
19 months ago by Omics data mining ▴ 260
4
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1
reply
1.1k
views
SCTransform in single cell
SCTransform seurat
updated 19 months ago by 142k • written 19 months ago by ▴ 260
0
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0
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621
views
Comment: Comment: overlap statistics among multiple bed files
19 months ago by Omics data mining ▴ 260
0
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0
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489
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Comment: Comment: exportFASTA not working
19 months ago by Omics data mining ▴ 260
0
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1
reply
621
views
Comment: Comment: overlap statistics among multiple bed files
19 months ago by Omics data mining ▴ 260
1
vote
4
replies
621
views
overlap statistics among multiple bed files
bedtools
updated 10 months ago by 43k • written 19 months ago by ▴ 260
0
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2
replies
489
views
exportFASTA not working
exportFASTA biomart getSeq
19 months ago by Omics data mining ▴ 260
0
votes
2
replies
522
views
Filteration of uniquely mapped reads
samtools bam
updated 10 months ago by 43k • written 20 months ago by ▴ 260
1
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0
replies
636
views
Comment: Comment: Identifying DEG's on Integrated samples
20 months ago by Omics data mining ▴ 260
1
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2
replies
929
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
20 months ago by Omics data mining ▴ 260
0
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0
replies
1.6k
views
Comment: Comment: conda env in snakemake
20 months ago by Omics data mining ▴ 260
0
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1
reply
1.6k
views
Comment: Comment: conda env in snakemake
20 months ago by Omics data mining ▴ 260
0
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4
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1.6k
views
conda env in snakemake
snakemake conda
20 months ago by Omics data mining ▴ 260
0
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1
reply
2.9k
views
SCTransform + Harmony in Seurat for batch correction
batch transcriptome spatial correction Seurat
updated 23 months ago by ▴ 10 • written 2.1 years ago by ▴ 260
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0
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564
views
Comment: Comment: from dexseq results to alternative splicing events identification
2.2 years ago by Omics data mining ▴ 260
0
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0
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401
views
calculate the variance across the samples
10X spatial cell single visium
2.2 years ago by Omics data mining ▴ 260
0
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2
replies
564
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from dexseq results to alternative splicing events identification
dexseq alternative splicing
2.2 years ago by Omics data mining ▴ 260
0
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2
replies
844
views
Differential transcript usage from Salmon data
DTU rnaseqDTU transcript differential stageR
updated 16 months ago by ▴ 120 • written 2.2 years ago by ▴ 260
161 results • Page 1 of 4
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