identification of overlapped, proximal and distal gene for peak regions
Hello Everyone I am working on Chip seq peak regions. I am interested to identify if there are any overlapped or proximal genes and distal genes for each peak regions. Previously I used bedops for the identification of first closest match. Is it possible to define desired overlap criteria while annotating "peak regions" against gff file with bedops method ? I will appreciate all the suggestions !!
Thanks in advance
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husensofteng
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Omics data mining
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Omics data mining
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BedTools window could be useful here