Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
117,171 results • Page
2 of 2344
Sort: replies
Rank
Views
Votes
Replies
32
votes
51
replies
20k
views
8 follow
Getting Unmapped Reads: Comparing Fastq To Bam
fastq
samtools
bedtools
bam
updated 12.5 years ago by
brentp
24k • written 12.5 years ago by
User 9996
▴ 840
94
votes
50
replies
53k
views
16 follow
PCA plot from read count matrix from RNA-Seq
RNA-Seq
pca
updated 2.5 years ago by
BioNovice247
▴ 20 • written 6.6 years ago by
rachel.kubik12
▴ 220
27
votes
50
replies
18k
views
7 follow
Extract fasta sequences from a large file using a list of names
fasta
updated 15 months ago by
Ram
44k • written 9.1 years ago by
fhsantanna
▴ 620
188
votes
50
replies
74k
views
41 follow
How To Remove The Same Sequences In The Fasta Files?
fasta
sequence
duplicates
updated 20 months ago by
Ram
44k • written 13.6 years ago by
Zhangleisdau
▴ 340
26
votes
50
replies
14k
views
8 follow
Tool:
Retrieve a subset of FASTA from large Illumina multi-FASTA file
fasta
multi-fasta
illumina
updated 11 months ago by
Ram
44k • written 8.0 years ago by
hcwang
▴ 50
22
votes
50
replies
17k
views
Why I can not install anything on R?
R
software error
5.6 years ago by
Za
▴ 140
93
votes
50
replies
16k
views
17 follow
Forum:
Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics
23andMe
updated 15 months ago by
Ram
44k • written 10.5 years ago by
Istvan Albert
100k
12
votes
50
replies
4.2k
views
How can I find out the Linux version and what is the ftp command to install R and R Studio on Linux server?
R
7.2 years ago by
thomas.f.hahn2
▴ 100
85
votes
49
replies
10k
views
31 follow
Which Application Is Truly Missing In Bioinformatics?
subjective
general
updated 6 months ago by
Ram
44k • written 14.2 years ago by
Jarretinha
3.4k
262
votes
48
replies
23k
views
37 follow
Forum:
Bioinformatics courses, workshops or training
Workshop
Training
Courses
updated 15 months ago by
Lars
★ 1.0k • written 9.0 years ago by
Deepak Tanwar
★ 4.2k
72
votes
48
replies
18k
views
15 follow
Tutorial:
For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs
alignment
bwa
updated 15 months ago by
Ram
44k • written 11.3 years ago by
lh3
33k
39
votes
48
replies
7.1k
views
CUTADAPT in windows
sequencing
updated 15 months ago by
Ram
44k • written 9.1 years ago by
zizigolu
★ 4.3k
72
votes
48
replies
8.6k
views
18 follow
What Kind Of Bioinformatics Tutorials Would You Like To See Online?
education
updated 15 months ago by
Ram
44k • written 13.1 years ago by
User 59
13k
68
votes
48
replies
9.0k
views
16 follow
Forum:
Stranger Things: unexpected limitations of popular tools
samtools
hisat2
updated 12 months ago by
Ram
44k • written 6.9 years ago by
Istvan Albert
100k
90
votes
48
replies
34k
views
29 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm
rna-seq
bioconductor
updated 6 months ago by
Ram
44k • written 10.6 years ago by
Irsan
★ 7.8k
131
votes
48
replies
16k
views
19 follow
Justifying Learning Linux For Bioinformatics
linux
subjective
updated 12.8 years ago by
Guangchuang Yu
★ 2.6k • written 12.8 years ago by
Eric Normandeau
11k
18
votes
47
replies
4.8k
views
Fastq Trimmer by pattern
fastq
trimming
reads
terminal
7.3 years ago by
dzisis1986
▴ 70
22
votes
47
replies
5.4k
views
(solved) I couldn't reproduce the problem of max_target_seqs
blast
updated 5.2 years ago by
gb
★ 2.2k • written 5.7 years ago by
fishgolden
▴ 510
23
votes
47
replies
7.2k
views
6 follow
Dbsnp Individual Genotyping Information For Specific Snps
dbsnp
updated 13.2 years ago by
Khader Shameer
18k • written 13.2 years ago by
Andrea_Bio
★ 2.8k
188
votes
47
replies
3.1k
views
16 follow
Job:
Bioinformatics freelancers needed
freelancer
updated 13 months ago by
Ram
44k • written 8.1 years ago by
Bioinfexperts
▴ 190
37
votes
46
replies
7.2k
views
12 follow
Quick Programming Challenge: How Do I Calculate Reference Coverage From A Table Of Alignment Starts And Ends?
code
alignment
programming
updated 5.7 years ago by
Ram
44k • written 14.1 years ago by
Jeremy Leipzig
22k
126
votes
46
replies
51k
views
21 follow
Forum:
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization
ChIP-Seq
homer
ngsplot
deeptools
updated 13 months ago by
Ram
44k • written 8.2 years ago by
Sinji
★ 3.2k
43
votes
46
replies
4.3k
views
taking sequences of a list of miRNAs
miRNA
mirbase
sequence
gene
updated 7.6 years ago by
Ram
44k • written 7.6 years ago by
zizigolu
★ 4.3k
105
votes
46
replies
13k
views
13 follow
Forum:
Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 15 months ago by
Ram
44k • written 10.8 years ago by
ugly.betty77
★ 1.1k
176
votes
46
replies
19k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
6 months ago by
Istvan Albert
100k
92
votes
46
replies
12k
views
28 follow
Best Language For Introductory Programming Course From Within An Introduction Course On Bioinformatics.
programming
subjective
updated 15 months ago by
Ram
44k • written 12.9 years ago by
Andra Waagmeester
3.2k
85
votes
46
replies
9.4k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 10 weeks ago by
LauferVA
4.2k • written 11 months ago by
Sasha
▴ 850
237
votes
45
replies
72k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen
sequencing
illumina
exome
human
updated 12.9 years ago by
User 9126
▴ 50 • written 14.0 years ago by
Biomed
5.0k
185
votes
45
replies
32k
views
27 follow
How To Organize A Pipeline Of Small Scripts Together?
pipeline
general
updated 7 months ago by
Ram
44k • written 14.3 years ago by
Giovanni M Dall'Olio
28k
4
votes
45
replies
7.9k
views
SAM file wrong? help with validatesamfile
EXOME
updated 13 months ago by
Ram
44k • written 7.9 years ago by
cristina_sabiers
▴ 110
22
votes
45
replies
14k
views
9 follow
Tool to separate human and mouse rna seq reads
RNA-Seq
next-gen-sequencing
updated 16 months ago by
Ram
44k • written 9.0 years ago by
Ron
★ 1.2k
108
votes
45
replies
87k
views
30 follow
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta
updated 21 months ago by
aswinssoman
▴ 80 • written 11.8 years ago by
Mchimich
▴ 320
21
votes
44
replies
4.4k
views
How to analyze Illumina RNASeq data
RNA-Seq
sequencing
next-gen
3.8 years ago by
Kumar
▴ 170
185
votes
44
replies
84k
views
30 follow
Drawing Chromosome Ideograms With Data
ideogram
visualization
chromosome
updated 10 weeks ago by
Michael
54k • written 14.2 years ago by
Yuri
★ 1.7k
46
votes
44
replies
25k
views
9 follow
bash loop for alignment RNA-seq data
RNA-Seq
next-gen
alignment
updated 20 months ago by
Ram
44k • written 10.1 years ago by
Paul
★ 1.5k
122
votes
44
replies
11k
views
24 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta
biostars
updated 7 months ago by
Ram
44k • written 11.5 years ago by
Istvan Albert
100k
43
votes
44
replies
6.3k
views
14 follow
Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinformatics stuff?
metagenomics
amplicon
macbook
Intel
MacOs
updated 7 months ago by
steve
★ 3.5k • written 7 months ago by
l.gallucci
▴ 10
197
votes
44
replies
72k
views
33 follow
Tutorial:
Analysing Microarray Data In Bioconductor
microarray-analysis
bioconductor
updated 16 months ago by
Ram
44k • written 11.7 years ago by
Obi Griffith
20k
121
votes
44
replies
21k
views
21 follow
What Is Your Favorite Question To Ask When Interviewing Potential Bioinformaticians?
subjective
updated 15 months ago by
Ram
44k • written 13.9 years ago by
Madelaine Gogol
5.3k
90
votes
44
replies
61k
views
28 follow
Tool to generate proportional Venn Diagrams?
visualization
updated 2.1 years ago by
Ram
44k • written 13.1 years ago by
Ryan D
★ 3.4k
102
votes
44
replies
9.2k
views
22 follow
What Are Numbers Every Bioinformatician Should Know?
knowledge
career
updated 15 months ago by
Ram
44k • written 10.8 years ago by
brentp
24k
130
votes
44
replies
34k
views
16 follow
Forum:
Trimming adapter sequences - is it necessary?
NGS
adapter
RNA-Seq
updated 14 months ago by
Ram
44k • written 7.7 years ago by
Lars
★ 1.0k
99
votes
44
replies
24k
views
33 follow
Best Free Text Editor For All Popular Languages (R, Python, Perl Etc..)
text
r
perl
python
updated 6.7 years ago by
grant.hovhannisyan
★ 2.6k • written 12.2 years ago by
John
★ 1.5k
27
votes
44
replies
15k
views
How to remove contamination from the transcriptome assembly
RNA-Seq
contamination
assembly
blast
Hiseq reads
updated 21 months ago by
Ram
44k • written 8.6 years ago by
seta
★ 1.9k
155
votes
44
replies
32k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 23 months ago by
Ram
44k • written 10.4 years ago by
Carlos Borroto
★ 2.1k
16
votes
43
replies
6.8k
views
Stuck on calculating principal components
Vegan
R
software error
SNP
updated 6.5 years ago by
pfs
▴ 280 • written 6.5 years ago by
zizigolu
★ 4.3k
31
votes
43
replies
20k
views
11 follow
Volcano plot help code
R
rna-seq
updated 5.9 years ago by
jordi.planells
▴ 480 • written 6.1 years ago by
anasofiamoreira94
▴ 80
66
votes
43
replies
27k
views
23 follow
Ngs - Huge (Fastq) File Parsing - Which Language For Good Efficiency ?
next-gen
sequencing
parsing
fastq
programming
updated 2.3 years ago by
Ram
44k • written 13.4 years ago by
toni
★ 2.2k
59
votes
43
replies
21k
views
18 follow
Tutorial:
Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
pbalign
pacbio
arrow
smrt-limk
updated 14 months ago by
Ram
44k • written 6.7 years ago by
Rox
★ 1.4k
1
vote
43
replies
4.1k
views
Database from .gbk files
database
gbk
ncbi
updated 13 months ago by
Raul
• 0 • written 4.0 years ago by
graysonford
▴ 10
117,171 results • Page
2 of 2344
Recent Votes
Answer: Does HaploView perform phasing?
Answer: Does HaploView perform phasing?
Does HaploView perform phasing?
Answer: how to design a guide RNA
Comment: how to design a guide RNA
Comment: how to design a guide RNA
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
Recent Locations •
All
Brazil,
11 minutes ago
New Zealand,
11 minutes ago
Whitefish, MT,
14 minutes ago
Saskatoon,
21 minutes ago
Australia,
22 minutes ago
Japan,
26 minutes ago
Colombia,
28 minutes ago
Recent Awards •
All
Scholar
to
geneontologyhelp
▴ 410
Popular Question
to
Pei
▴ 170
Popular Question
to
Erin Haskell
▴ 470
Popular Question
to
José
▴ 10
Popular Question
to
George
▴ 10
Popular Question
to
landscape95
▴ 190
Popular Question
to
NorbertK
▴ 10
Recent Replies
Comment: Intersection of multiple vcf files
by
Jeremy Leipzig
22k
isec is pretty awful for these set operations - especially since individual samples present alleles, not lines in a VCF file. If you can co…
Comment: help in changing Y scale in R
by
Medhat
9.7k
Maybe try to calculate min and max combined_min <- min(a_filtered$value, a_filtered_tv$value, na.rm = TRUE) combined_max <- max(a_…
Answer: help in changing Y scale in R
by
ATpoint
82k
Use `+ylim(c(lower, upper))`. Either set manually, or query both `a_filtered` and `a_filtered_tv` for the minimum and maximum values that g…
Comment: Error with pheatmap - 'from' must be a finite number
by
zx8754
11k
I am not familiar with deseq data, but if it makes sense, remove rows/columns that have only NAs. #remove rows x<- mat.z[ rowSums(…
Answer: when I use htslib to write a bam. Error of "truncated file" shows by samtools
by
John Marshall
3.0k
There are several problems with this code: 1. You have not set `b->l_data`, which here should be set to the same value as `b->m_data`. T…
Comment: Best practices in Fungal Genome Assembly
by
Umer
▴ 50
Should I use both Recon and Pilon for polshing ? Recon uses Long-reads and Pilon uses short-read. if both should be used, is their any pref…
Comment: Mutation counts corrected by number of samples
by
garcesj
▴ 50
How come? If I have a pro-tumorigenic product, for example, wouldn't this comparison be valid?
Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
by
Ngrin
• 0
Thanks @Zhenyu Zhang for your response. I have just looked at the files you mentioned. Do you have any recommended package or code snippet …
Comment: coding and non-coding region of the viral genome
by
Ghada
• 0
As far I understand non coding region equal to the intergenic region? please can you write an example for how to calculate one region ? I…
Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
by
Zhenyu Zhang
★ 1.2k
In the GDC, there are raw float value CNV data, and integer CNV values after advanced modeling. If you only want those floating-point numbe…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
by
Ram
44k
Please edit your original post and add this at the top so everyone reads that first. GeneCards politely asks people not to scrape - not res…
Comment: I cannot download VG in any way
by
Ram
44k
In that case, OP should have said "Cannot install SequenceTube", since that is the problem, not vg. Maybe this is the SequenceTube that OP…
Comment: I cannot download VG in any way
by
GenoMax
142k
I read that to mean that the only way they were able to download `vg` was by using `conda`. Since `SequenceTube` (whatever that is) require…
Comment: I cannot download VG in any way
by
Ram
44k
> The only way that I managed to download vg is using conda, however since my primary goal is to download SequenceTube You're mentioning t…
Comment: I cannot download VG in any way
by
Ram
44k
Also, OP buries the lede and uses a misleading title. They are able to install vg using conda, but that is secondary to them using a differ…
Traffic: 1300 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6