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Recent Replies
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
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mikemakaveli1
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![enter image description here][1]
[1]: /media/images/1e0cd4e3-b35b-407c-b41d-08a0f746
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
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mikemakaveli1
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no, i have uploaded the file and selected the file, not sure of the blank space
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Hi dthorbur, thanks for the response. I have run Augustus using Arabidopsis as a species. I would like to know about the suitability of usi…
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
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It's an empty screenshot in terms of nothing loaded into IGV, you realize that?
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mikemakaveli1
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how can I interpret the mutation for the gene of ATM
Comment: How does gene length effect the number of reads mapped
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dsull
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Alicia Oshlack has done some cool work on this but even the plots in her papers show that TPMs sometimes overcorrect and the relationship i…
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ahmad.sajad4541
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![stringtie error][1]
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![The below image contains the code and result also.][1]
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My response above was actually partly inspired off of a reading of your paper :)
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> everything is showing equal in environment section. But when I am checking for equalities, it’s showing False
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You can calculate the percentage of intronic reads for each cell using the [DropletQC][1] package for R.
In this preprint we discuss th…
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I did say almost - obviously things are going to get tricky at gene ends - this is why we have the concept of effective length. Its interst…
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Malat1 correlates with the intronic content and can be used as a nuclear indicator. In this preprint we discuss about this artifact and the…
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I wouldn't say it's true that number of reads is linearly proportional to the length of the gene. That's just an assumption that people mak…
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Using any of the species present would likely result in a resonable annotation set. You could use *Arabidopsis* since it likely has the mos…
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