Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
32 results • Page
1 of 1
Sort: Votes
Rank
Views
Votes
Replies
5
votes
6
replies
392
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 18 hours ago by
me
▴ 760 • written 1 day ago by
Mariana
▴ 40
3
votes
2
replies
319
views
Extract protein sequence
fasta
alignment
blast
15 hours ago by
anna
▴ 20
2
votes
4
replies
266
views
from row count to tpm
tpm
row-count
normalization
updated 19 hours ago by
Ram
43k • written 8 days ago by
michelafrancesconi9
▴ 20
2
votes
2
replies
137
views
p-value in CIBERSORT
CIBERSORT
p-value
1 hour ago by
michelafrancesconi9
▴ 20
1
vote
1
reply
156
views
Including plasmid in alignment
Bacteria
Transcriptomics
BOWTIE2
STAR
13 hours ago by
heelpPlease
• 0
1
vote
2
replies
167
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 19 hours ago by
Ram
43k • written 1 day ago by
Ravita
• 0
1
vote
8
replies
419
views
Downsampling fastq file
downsample
fastq
17 hours ago by
marco.barr
▴ 80
0
votes
2
replies
154
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
updated 19 hours ago by
GenoMax
141k • written 1 day ago by
Dora
▴ 10
0
votes
0
replies
79
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 19 hours ago by
Ram
43k • written 21 hours ago by
Ahiad Chen Zion
• 0
0
votes
1
reply
107
views
unable to get feature count results
featureCounts
updated 19 hours ago by
Ram
43k • written 1 day ago by
Ravita
• 0
0
votes
2
replies
172
views
RNAseq one control two conditions, shared and exclusive genes
conditions
RNAseq
multiple
Rstudio
19 hours ago by
matteo.levorato
• 0
0
votes
0
replies
77
views
Defined objects of type "S4" error in single cell analysis
Seurat
single-cell
DoubletFinder
single-nuclei
SeuratObject
18 hours ago by
sarphilsar
• 0
0
votes
3
replies
201
views
KEGG Pathways
r
RNA-seq
updated 17 hours ago by
Ram
43k • written 1 day ago by
Sudip
• 0
0
votes
8
replies
383
views
What does it mean single base resolution in sequencing?
SNP
sequencing
updated 15 hours ago by
LauferVA
4.2k • written 2 days ago by
jinyu
▴ 10
0
votes
3
replies
173
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 14 hours ago by
GenoMax
141k • written 19 hours ago by
jeffrey.maurer.informatics
• 0
0
votes
0
replies
73
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 13 hours ago by
Ram
43k • written 16 hours ago by
J
• 0
0
votes
1
reply
142
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 13 hours ago by
Ram
43k • written 18 hours ago by
Jonathan Yoou
▴ 60
0
votes
1
reply
142
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
updated 13 hours ago by
Ram
43k • written 18 hours ago by
Nafi
• 0
0
votes
3
replies
225
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 13 hours ago by
LChart
3.9k • written 1 day ago by
kl
▴ 10
0
votes
0
replies
58
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
11 hours ago by
O.rka
▴ 710
0
votes
3
replies
171
views
Telescope issue
Telescope
RNA-seq
updated 8 hours ago by
GenoMax
141k • written 16 hours ago by
eleven11
• 0
0
votes
1
reply
164
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 6 hours ago by
Ram
43k • written 11 hours ago by
Dr Huma Naz
• 0
0
votes
1
reply
88
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
updated 6 hours ago by
Ram
43k • written 9 hours ago by
rianna.collins
• 0
0
votes
1
reply
41
views
DESeq2 processing problems
deseq2
R
updated 1 hour ago by
ATpoint
82k • written 2 hours ago by
jagdish7921
• 0
0
votes
3
replies
231
views
Landmark gene selection in L1000.
L1000
landmark-gene
cmap
updated 22 hours ago by
GenoMax
141k • written 1 day ago by
kim
• 0
0
votes
1
reply
58
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 10 minutes ago by
i.sudbery
19k • written 11 hours ago by
Edmond
• 0
0
votes
0
replies
80
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 21 hours ago by
Ram
43k • written 22 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
76
views
barcode of TCR-sequencing
barcode
21 hours ago by
yueli7
▴ 250
0
votes
4
replies
197
views
Introduce SNPs on FASTA
simulation
snps
haplotypes
pharmacogenetics
updated 21 hours ago by
Michael
54k • written 23 hours ago by
Riccardo
▴ 10
0
votes
0
replies
76
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 21 hours ago by
Ram
43k • written 23 hours ago by
Alexandros
• 0
0
votes
0
replies
98
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 20 hours ago by
Ram
43k • written 20 hours ago by
Chakri
• 0
0
votes
3
replies
365
views
why renaming Idents in Seurat object doesn't work?
Seurat
RenameIdents
R
20 hours ago by
Assa Yeroslaviz
★ 1.8k
32 results • Page
1 of 1
Recent Votes
Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
Answer: Verify if all the components of a pathway are present in a genomes
Answer: p-value in CIBERSORT
Answer: Can I have multiple active GDC download tokens?
Answer: Can I have multiple active GDC download tokens?
Comment: Can I have multiple active GDC download tokens?
Comment: Programmatically retrieving positions of protein active site residues
Recent Locations •
All
India,
2 minutes ago
Russia,
2 minutes ago
South Korea,
2 minutes ago
Oviedo,
6 minutes ago
India,
7 minutes ago
United States,
7 minutes ago
Glasgow, UK,
10 minutes ago
Recent Awards •
All
Teacher
to
i.sudbery
19k
Popular Question
to
mathavanbioinfo
▴ 90
Popular Question
to
Jautis
▴ 530
Popular Question
to
Jonathan Yoou
▴ 60
Popular Question
to
Chris
▴ 260
Commentator
to
Lluís R.
★ 1.2k
Popular Question
to
miles.anderson
▴ 10
Recent Replies
Comment: Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
by
i.sudbery
19k
Can you give more details of the data you are planning to use. What is the different studies, what are the comparisons you want to make.
Comment: p-value in CIBERSORT
by
michelafrancesconi9
▴ 20
Thank you so much!!
Comment: DESeq2 processing problems
by
ATpoint
82k
https://support.bioconductor.org/p/9158036/#9158037 > ...make your question reproducible by putting data and code You're free to ignore a…
Comment: POSSUM not working due to incompatible pssm file
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: after selecting specific GO terms to plot, cneplot is not showing any color for
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: Telescope issue
by
GenoMax
141k
Looks like there is a tab missing between the sequence and the quality string.
Comment: Post-imputation plot
by
LChart
3.9k
I would pull out the variants with panel_freq ~ 1 - upload_freq and min(panel_freq, upload_freq) < 0.4. I would check if these are G/C or A…
Comment: Telescope issue
by
eleven11
• 0
Hello the output is A01940:33:GW2208142379th:3:1317:24126:3505 355 chr14 16651125 0 150M = 17034150 122900 GCTAACAGAGTTGAACCTTTCTATTG…
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
Looking at the [code here][1] `bundle_uuid` seems to be related to the submissions to HCA. Samples that ran on multiple lanes seem to have …
Comment: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
this is very true and increasingly true as time goes forward. thanks for supplementing this post with your own :-)
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
jeffrey.maurer.informatics
• 0
Thank you, but I've already checked out that site to see if I was missing anything and I don't see any answers to my questions there.
Answer: p-value in CIBERSORT
by
Aspire
▴ 320
You have not explicitly specified the number of permutations (which are used to calculate the p-value). The default value of the permutatio…
Comment: Telescope issue
by
GenoMax
141k
> CIGAR and query sequence are of different length [W::sam_read1] Parse error at line 9954941 Problem appears to be at that line. Can you …
Comment: KEGG Pathways
by
Ram
43k
Give us as much detail as you can. What error does it give you?
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
SRA Run Selector shows a better view of the metadata: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761679&o=acc_s%3Aa
Traffic: 1909 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6