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407
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
updated 8 days ago by 161k • written 9 days ago by ▴ 100
0
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0
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407
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
9 days ago by Matteo Ungaro ▴ 100
2
votes
8
replies
407
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 8 days ago by 161k • written 9 days ago by ▴ 100
0
votes
1
reply
407
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
9 days ago by Matteo Ungaro ▴ 100
0
votes
1
reply
407
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
9 days ago by Matteo Ungaro ▴ 100
0
votes
0
replies
329
views
Comment: Comment: bam merging for archaic samples
4 weeks ago by Matteo Ungaro ▴ 100
0
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2
replies
329
views
bam merging for archaic samples
samtools bam
updated 29 days ago by 43k • written 4 weeks ago by ▴ 100
0
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0
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298
views
Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by Matteo Ungaro ▴ 100
0
votes
2
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298
views
Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by Matteo Ungaro ▴ 100
2
votes
4
replies
298
views
filtering VCF sites and impose whatever excluded ad missing
conditions vcf filters bcftools
6 weeks ago by Matteo Ungaro ▴ 100
5
votes
4
replies
491
views
change order of violin plots in ggplot2
R ggplot2 violin-plots
updated 8 weeks ago by 43k • written 8 weeks ago by ▴ 100
3
votes
0
replies
491
views
Answer: Answer: change order of violin plots in ggplot2
updated 8 weeks ago by 43k • written 8 weeks ago by ▴ 100
0
votes
0
replies
491
views
Comment: Comment: change order of violin plots in ggplot2
8 weeks ago by Matteo Ungaro ▴ 100
0
votes
1
reply
491
views
Comment: Comment: change order of violin plots in ggplot2
8 weeks ago by Matteo Ungaro ▴ 100
0
votes
1
reply
514
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by Matteo Ungaro ▴ 100
0
votes
5
replies
514
views
PCA from plink2 for SGDP using a pangenome and DeepVariant
umap DeepVariant pangenome plink2 pca
updated 3 months ago by ▴ 300 • written 3 months ago by ▴ 100
0
votes
1
reply
514
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by Matteo Ungaro ▴ 100
1
vote
0
replies
975
views
Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
6 months ago by Matteo Ungaro ▴ 100
1
vote
1
reply
975
views
Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
6 months ago by Matteo Ungaro ▴ 100
0
votes
1
reply
975
views
Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
6 months ago by Matteo Ungaro ▴ 100
8
votes
6
replies
975
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
6 months ago by Matteo Ungaro ▴ 100
0
votes
0
replies
321
views
Determine INDELs number (both classes separately) from reference and graph-based VCF files
INDEL vcf
updated 7 months ago by 43k • written 7 months ago by ▴ 100
0
votes
0
replies
399
views
Merged CRAM output
warning samtools CRAM merging
10 months ago by Matteo Ungaro ▴ 100
5
votes
4
replies
1.2k
views
Merging CRAM files
samtools CRAM
updated 10 months ago by ★ 1.2k • written 10 months ago by ▴ 100
0
votes
1
reply
1.2k
views
Comment: Comment: Merging CRAM files
10 months ago by Matteo Ungaro ▴ 100
0
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0
replies
1.2k
views
Comment: Comment: Edit and re-head BAM file
12 months ago by Matteo Ungaro ▴ 100
0
votes
0
replies
1.2k
views
Comment: Comment: Edit and re-head BAM file
12 months ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.2k
views
Comment: Comment: Edit and re-head BAM file
12 months ago by Matteo Ungaro ▴ 100
3
votes
6
replies
1.2k
views
Edit and re-head BAM file
samtools BAM
updated 11 months ago by 43k • written 12 months ago by ▴ 100
2
votes
2
replies
696
views
filter VCF based on FORMAT
vcf bcftools
updated 11 months ago by 43k • written 14 months ago by ▴ 100
0
votes
1
reply
636
views
Comment: Comment: formatting VCF file for analyses
20 months ago by Matteo Ungaro ▴ 100
3
votes
3
replies
636
views
formatting VCF file for analyses
VCF awk
updated 11 months ago by 43k • written 20 months ago by ▴ 100
0
votes
0
replies
335
views
Chromosome Path in Pairtools
Pairtools
updated 11 months ago by 43k • written 2.2 years ago by ▴ 100
2
votes
3
replies
1.7k
views
How to clean PacBio reads
PacBio HiFi CLR
updated 2.2 years ago by ▴ 280 • written 2.2 years ago by ▴ 100
0
votes
1
reply
1.7k
views
Comment: Comment: How to clean PacBio reads
2.2 years ago by Matteo Ungaro ▴ 100
0
votes
0
replies
1.1k
views
Comment: Comment: Issues in downloading read sets — sra fastq-dump
2.2 years ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: Issues in downloading read sets — sra fastq-dump
2.2 years ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: Issues in downloading read sets — sra fastq-dump
2.2 years ago by Matteo Ungaro ▴ 100
3
votes
7
replies
1.1k
views
Issues in downloading read sets — sra fastq-dump
script cluster sra fastq-dump
updated 2.2 years ago by 82k • written 2.2 years ago by ▴ 100
0
votes
0
replies
1.3k
views
Comment: Comment: Help with mitochondrial sequences from GenBank!!!
3.0 years ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Help with mitochondrial sequences from GenBank!!!
3.0 years ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Help with mitochondrial sequences from GenBank!!!
3.0 years ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Help with mitochondrial sequences from GenBank!!!
3.0 years ago by Matteo Ungaro ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Help with mitochondrial sequences from GenBank!!!
3.0 years ago by Matteo Ungaro ▴ 100
1
vote
10
replies
1.3k
views
Help with mitochondrial sequences from GenBank!!!
ftp genbank mitochondrial
3.0 years ago by Matteo Ungaro ▴ 100
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