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2
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233
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What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
4 weeks ago by Alexander ▴ 220
5
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2
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3.0k
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Biopython error: "ModuleNotFoundError: No module named 'Bio.SubsMat'"
biopython
updated 6 months ago by ▴ 20 • written 12 months ago by ▴ 220
3
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5
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2.3k
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News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
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0
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2.3k
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Answer: Answer: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (C
9 months ago by Alexander ▴ 220
0
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0
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2.3k
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Answer: Answer: (27 July - "DeepLoc") A free webinar on on-going CAFA5 (Critical Assessment of
9 months ago by Alexander ▴ 220
0
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0
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2.3k
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Answer: Answer: (14 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional An
10 months ago by Alexander ▴ 220
0
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0
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2.3k
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Answer: Answer: (3 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional Ann
10 months ago by Alexander ▴ 220
3
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1
reply
832
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Answer: Answer: Tools for sentiment analysis that have been vetted on pubmed abstracts
11 months ago by Alexander ▴ 220
1
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1
reply
738
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Comment: Comment: How to use Cyclone to predict cell cycle from single cell Multiomic data (scRNA
11 months ago by Alexander ▴ 220
0
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0
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801
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Comment: Comment: How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal
11 months ago by Alexander ▴ 220
0
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0
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731
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Comment: Comment: Need help using Biopython
11 months ago by Alexander ▴ 220
2
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2
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801
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How does ncbi-blastP calculate the score ? (Why it is lower than mean-diagonal(blossum62) * length ) ?
protein alignment
11 months ago by Alexander ▴ 220
0
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0
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3.4k
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Comment: Comment: Asking for feedback on a Python library for computing alignments
11 months ago by Alexander ▴ 220
0
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0
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9.2k
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Comment: Comment: ChatGPT optimized for bioinformatics questions
11 months ago by Alexander ▴ 220
3
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2
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9.2k
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Answer: Answer: ChatGPT optimized for bioinformatics questions
11 months ago by Alexander ▴ 220
0
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0
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3.4k
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Comment: Comment: Asking for feedback on a Python library for computing alignments
11 months ago by Alexander ▴ 220
1
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1
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3.4k
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Comment: Comment: Asking for feedback on a Python library for computing alignments
11 months ago by Alexander ▴ 220
0
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1
reply
3.4k
views
Comment: Comment: Asking for feedback on a Python library for computing alignments
11 months ago by Alexander ▴ 220
2
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0
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1.9k
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Comment: Comment: Get relationships and hierarchies for GO terms
11 months ago by Alexander ▴ 220
0
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1
reply
5.5k
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Comment: Comment: Getting Pairwise Sequence Alignment Score With Biopython
11 months ago by Alexander ▴ 220
0
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0
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959
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Comment: Comment: What are recommended parameters for the local protein alignment ?
11 months ago by Alexander ▴ 220
0
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1
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959
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Comment: Comment: What are recommended parameters for the local protein alignment ?
11 months ago by Alexander ▴ 220
0
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4
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959
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What are recommended parameters for the local protein alignment ?
protein alignment
11 months ago by Alexander ▴ 220
0
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1
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1.4k
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Comment: Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
11 months ago by Alexander ▴ 220
0
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1
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1.4k
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Comment: Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
11 months ago by Alexander ▴ 220
0
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0
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1.4k
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Comment: Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
11 months ago by Alexander ▴ 220
2
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7
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1.4k
views
What is "pident" (percentage of identical matches) in the "Diamond" protein alignment ?
protein alignment
updated 11 months ago by 4.2k • written 11 months ago by ▴ 220
0
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0
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2.5k
views
Comment: Comment: The fastest protein sequence aligner available
11 months ago by Alexander ▴ 220
0
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0
replies
513
views
What controls splicing to switch from CD45RA to CD45RO isoforms ?
scRNA-seq CD-genes
14 months ago by Alexander ▴ 220
2
votes
1
reply
591
views
Understanding "drop-out" for scRNA-seq data
scRNA-seq
updated 14 months ago by ▴ 120 • written 14 months ago by ▴ 220
0
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0
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1.7k
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Comment: Comment: What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with cha
15 months ago by Alexander ▴ 220
5
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8
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1.7k
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What kinase phosphorylates WNK2 at site s49 (and s45) ? And how to deal with chatGPT with such questions ?
chatGPT phosphorylation
updated 15 months ago by ★ 4.9k • written 16 months ago by ▴ 220
3
votes
2
replies
677
views
Looking for list(s) of human genes which are differentially expressed between male and female (better for hematopoetic progenitor cells)
human genes
updated 16 months ago by 82k • written 16 months ago by ▴ 220
0
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0
replies
879
views
Comment: Comment: Biological reason for correlation of CD36 with S100A4 , S100A6
17 months ago by Alexander ▴ 220
0
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1
reply
879
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Biological reason for correlation of CD36 with S100A4 , S100A6
scRNA-seq CD-genes
17 months ago by Alexander ▴ 220
0
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1
reply
490
views
Any biological reason for correlation between CD115-CD88-CD71, and other correlations between CD** proteins ?
scRNA-seq CD-genes
updated 19 months ago by ★ 1.8k • written 19 months ago by ▴ 220
0
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0
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323
views
Which genes (their RNA transcripts) may influence : CD** genes protein levels ?
scRNA-seq CD-genes
19 months ago by Alexander ▴ 220
5
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4
replies
919
views
Databases with Genes <-> Diseases relations
Cancer Genes
updated 19 months ago by ★ 3.8k • written 19 months ago by ▴ 220
0
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0
replies
311
views
Interpretation for increase of counts of non-zero values in single cell ATAC-seq samples ?
ATAC-seq scRNA-seq
20 months ago by Alexander ▴ 220
0
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0
replies
545
views
Comment: Comment: Predicting celltype from only single cell ATAC Seq analysis
20 months ago by Alexander ▴ 220
1
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1
reply
623
views
What can we "see" with single cell ATAC-seq data ? (e.g. cell cycle - possible or not ? )
ATAC-seq
updated 20 months ago by 82k • written 20 months ago by ▴ 220
1
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0
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448
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
20 months ago by Alexander ▴ 220
1
vote
0
replies
516
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
20 months ago by Alexander ▴ 220
0
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1
reply
1.6k
views
Comment: Comment: Ewing sarcoma "related" genes ?
23 months ago by Alexander ▴ 220
3
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10
replies
1.6k
views
Ewing sarcoma "related" genes ?
ewing sarcoma
updated 23 months ago by 4.2k • written 23 months ago by ▴ 220
0
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0
replies
1.6k
views
Comment: Comment: Ewing sarcoma "related" genes ?
23 months ago by Alexander ▴ 220
0
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0
replies
1.6k
views
Comment: Comment: Ewing sarcoma "related" genes ?
23 months ago by Alexander ▴ 220
0
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2
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1.6k
views
Comment: Comment: Ewing sarcoma "related" genes ?
23 months ago by Alexander ▴ 220
0
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0
replies
686
views
Comment: Comment: What is known about mechanisms which switch "fast" cell cycle for ESC to "normal
2.0 years ago by Alexander ▴ 220
1
vote
2
replies
686
views
What is known about mechanisms which switch "fast" cell cycle for ESC to "normal" cell cycle for normal cells?
cellcycle stemcells
2.0 years ago by Alexander ▴ 220
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