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277
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Using adonis to include a random effect
mixed-model adonis
updated 5 weeks ago by 3.9k • written 5 weeks ago by ▴ 120
1
vote
3
replies
540
views
how to get the variance explained by the independent variable from multivariate distance matrix regression model with random effect?
multivariate-distance-matrix regression
updated 5 weeks ago by 3.9k • written 5 weeks ago by ▴ 120
1
vote
3
replies
291
views
CCA with random effects model
CCA
updated 7 weeks ago by 14k • written 7 weeks ago by ▴ 120
0
votes
0
replies
193
views
DESeq stats or Wilcoxon auc scores as input in pathway analysis
pathway-analysis
updated 10 weeks ago by 44k • written 10 weeks ago by ▴ 120
2
votes
6
replies
520
views
how to get entrez IDs from wormbase gene IDs
wormbase
10 weeks ago by leranwangcs ▴ 120
1
vote
3
replies
414
views
Annotate wormbase genes
RNA-seq
3 months ago by leranwangcs ▴ 120
1
vote
6
replies
644
views
RNAseq analysis: how to add new gene into an existing worm based reference
RNA-seq
updated 3 months ago by ▴ 170 • written 3 months ago by ▴ 120
4
votes
1
reply
663
views
How to interpret Clustree results?
scRNA clustering clustree
updated 9 months ago by 3.9k • written 9 months ago by ▴ 120
5
votes
1
reply
1.9k
views
How does FindNeighbors() and FindClusters() related and work?
seurat clustering
updated 9 months ago by ★ 2.5k • written 9 months ago by ▴ 120
4
votes
6
replies
1.1k
views
6 follow
t-SNE plot dots that are close together assigned to different clusters.
scRNA clustering
updated 9 months ago by 4.2k • written 9 months ago by ▴ 120
0
votes
2
replies
1.8k
views
Cannot color cells with 0 expression in certain color
Seurat scRNA
updated 20 months ago by ▴ 10 • written 3.1 years ago by ▴ 120
2
votes
3
replies
1.2k
views
RNASeq data has 3 files R1, R2 and R3, which one is the barcode file?
RNASeq
updated 22 months ago by 142k • written 22 months ago by ▴ 120
0
votes
5
replies
1.1k
views
different number of samples from each individual
statistics
updated 2.0 years ago by 88k • written 2.0 years ago by ▴ 120
0
votes
0
replies
1.0k
views
Error in (function (edges, n = max(edges), directed = TRUE) : At type_indexededgelist.c:117 : cannot create empty graph with negative number of v…
tidygraph
2.0 years ago by leranwangcs ▴ 120
1
vote
1
reply
1.7k
views
Seurat subset cluster cell annotation
Seurat
updated 2.3 years ago by ★ 1.0k • written 2.3 years ago by ▴ 120
0
votes
4
replies
1.1k
views
DESeq confusing results
DESeq
updated 2.4 years ago by 10k • written 2.4 years ago by ▴ 120
0
votes
3
replies
1.5k
views
Do I have to trim anything before I run MAGeCK?
MAGeCK
updated 2.4 years ago by 82k • written 2.4 years ago by ▴ 120
3
votes
5
replies
2.8k
views
How to get normalized count table from DESeq?
DESeq
updated 2.4 years ago by 82k • written 2.4 years ago by ▴ 120
2
votes
4
replies
1.1k
views
How to know if certain gene is highly expressed compared to some common housekeeping gene in a cell line?
expression gene
updated 2.5 years ago by ★ 17k • written 2.5 years ago by ▴ 120
0
votes
2
replies
970
views
fluteRRA() error: URL 'https://s3-eu-west-1.amazonaws.com....Timeout of 60 seconds was reached
MAGeCK
22 months ago by leranwangcs ▴ 120
2
votes
3
replies
1.1k
views
Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
CRISPR
updated 2.6 years ago by ▴ 140 • written 2.6 years ago by ▴ 120
1
vote
1
reply
1.0k
views
Can SingleR be reused to identify cell types after subsetting the original Seurat Object
scRNA
updated 2.7 years ago by ★ 17k • written 2.7 years ago by ▴ 120
0
votes
0
replies
692
views
PC p values in JackStrawPlot in Seurat are not in order
scRNA
2.7 years ago by leranwangcs ▴ 120
2
votes
3
replies
4.8k
views
Seurat re-clustering a cell subset but cell identity numbers are not completely showing up
scRNA
2.7 years ago by leranwangcs ▴ 120
1
vote
2
replies
800
views
how to identify if a contig.fa file comes from IDBA or Spades?
assembler
3.0 years ago by leranwangcs ▴ 120
0
votes
3
replies
1.7k
views
customized gene not show in the output from cellranger count even if I have added to the reference genome database
gene scRNA cellranger
updated 3.1 years ago by ▴ 40 • written 3.1 years ago by ▴ 120
1
vote
2
replies
7.7k
views
how to subset Seurat object by gene names
Seurat scRNA
3.1 years ago by leranwangcs ▴ 120
1
vote
2
replies
870
views
single cell RNA QC
scRNA QC
3.1 years ago by leranwangcs ▴ 120
1
vote
7
replies
1.9k
views
lftp mput 530 Login incorrect
software error
3.2 years ago by leranwangcs ▴ 120
4
votes
7
replies
2.2k
views
How to extract sequences from multiple fastq files based on part of the header?
sequencing
updated 3.2 years ago by 13k • written 3.2 years ago by ▴ 120
6
votes
5
replies
1.6k
views
Kept getting issue when using ImmGenData() in SingleR
R SingleR
3.2 years ago by leranwangcs ▴ 120
4
votes
4
replies
5.5k
views
How to get real cell names from Seurat Object?
rna-seq
updated 3.2 years ago by ▴ 230 • written 3.2 years ago by ▴ 120
4
votes
5
replies
5.0k
views
cellranger count error "Your reference does not contain the expected files, or they are not readable. Please check your reference folder on n145"
RNA-Seq
3.3 years ago by leranwangcs ▴ 120
33 results • Page 1 of 1
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