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3
votes
5
replies
487
views
Tutorial for analyzing WGBS data
NGS methylseq WGBS
9 weeks ago by pt.taklifi ▴ 60
0
votes
0
replies
487
views
Comment: Comment: Tutorial for analyzing WGBS data
9 weeks ago by pt.taklifi ▴ 60
0
votes
0
replies
487
views
Comment: Comment: Tutorial for analyzing WGBS data
9 weeks ago by pt.taklifi ▴ 60
0
votes
0
replies
487
views
Comment: Comment: Tutorial for analyzing WGBS data
9 weeks ago by pt.taklifi ▴ 60
1
vote
1
reply
225
views
is there a tool to recover corrupted fastq files
fastq short-read
updated 12 weeks ago by 43k • written 12 weeks ago by ▴ 60
0
votes
2
replies
891
views
are there any downloadable database for tissue specific DMRs?
t-DMR
updated 2.6 years ago by ▴ 80 • written 2.9 years ago by ▴ 60
0
votes
0
replies
734
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names r ngs annotate
2.9 years ago by pt.taklifi ▴ 60
0
votes
0
replies
994
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
3.0 years ago by pt.taklifi ▴ 60
1
vote
4
replies
994
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression TCGA RTCAG
3.0 years ago by pt.taklifi ▴ 60
0
votes
0
replies
994
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
3.0 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.4k
views
Comment: Comment: ATACseq batch effect coupled with biological effect
3.0 years ago by pt.taklifi ▴ 60
1
vote
3
replies
1.4k
views
ATACseq batch effect coupled with biological effect
batch-effect ATAC-seq
updated 11 months ago by 43k • written 3.0 years ago by ▴ 60
0
votes
0
replies
5.2k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by pt.taklifi ▴ 60
0
votes
1
reply
5.2k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by pt.taklifi ▴ 60
0
votes
0
replies
5.2k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by pt.taklifi ▴ 60
7
votes
5
replies
5.2k
views
How to create SAF from text file for FeatureCounts
featureCounts ATAC-seq
updated 11 months ago by 43k • written 3.0 years ago by ▴ 60
0
votes
0
replies
2.8k
views
Comment: Comment: get count matrix from bam files
3.1 years ago by pt.taklifi ▴ 60
2
votes
2
replies
2.8k
views
get count matrix from bam files
bam ATAC-seq
updated 11 months ago by 43k • written 3.1 years ago by ▴ 60
0
votes
0
replies
1.5k
views
how to get feature importance after SVM
high_dimensional SVM R
3.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.3k
views
Comment: Comment: How to implement k fold cv after randomForest
3.1 years ago by pt.taklifi ▴ 60
1
vote
2
replies
1.3k
views
How to implement k fold cv after randomForest
k_fold_cv R randomForest
3.1 years ago by pt.taklifi ▴ 60
2
votes
3
replies
732
views
How to remove repeats on galaxy
alignment repeats galaxy
updated 3.2 years ago by 20 • written 3.4 years ago by ▴ 60
0
votes
1
reply
909
views
Comment: C: how to select features for high dimension data?
3.2 years ago by pt.taklifi ▴ 60
1
vote
1
reply
779
views
how to determine low quality variants in vcf files
vcf variant_depth
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
3.0k
views
Comment: C: Merge bigwig Files with different intervals
3.2 years ago by pt.taklifi ▴ 60
1
vote
9
replies
3.0k
views
Merge bigwig Files with different intervals
bigwig Merge
3.2 years ago by pt.taklifi ▴ 60
2
votes
1
reply
2.0k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig bedGraph
updated 3.2 years ago by 82k • written 3.2 years ago by ▴ 60
0
votes
1
reply
3.0k
views
Comment: C: Merge bigwig Files with different intervals
3.2 years ago by pt.taklifi ▴ 60
4
votes
6
replies
7.6k
views
how to remove duplicates with picard
alignment deduplication
updated 3.2 years ago by 161k • written 3.2 years ago by ▴ 60
0
votes
0
replies
7.6k
views
Comment: C: how to remove duplicates with picard
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
7.6k
views
Comment: C: how to remove duplicates with picard
3.2 years ago by pt.taklifi ▴ 60
2
votes
1
reply
1.0k
views
samtools index error
alignment
updated 3.2 years ago by 161k • written 3.2 years ago by ▴ 60
8
votes
3
replies
909
views
how to select features for high dimension data?
machine-learning
updated 6 months ago by 43k • written 3.2 years ago by ▴ 60
7
votes
6
replies
1.8k
views
nohup with while loop
bash loop SRAtoolkit
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: nohup with while loop
3.3 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: nohup with while loop
3.3 years ago by pt.taklifi ▴ 60
0
votes
0
replies
915
views
Comment: C: error with bowtie2 alignment
3.3 years ago by pt.taklifi ▴ 60
0
votes
0
replies
915
views
Comment: C: error with bowtie2 alignment
3.3 years ago by pt.taklifi ▴ 60
0
votes
1
reply
915
views
Comment: C: error with bowtie2 alignment
3.3 years ago by pt.taklifi ▴ 60
2
votes
6
replies
915
views
error with bowtie2 alignment
alignment error sequencing
3.3 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: bcftools variant calling
3.3 years ago by pt.taklifi ▴ 60
0
votes
0
replies
705
views
Comment: C: sum of values in a column
3.3 years ago by pt.taklifi ▴ 60
0
votes
1
reply
705
views
Comment: C: sum of values in a column
3.3 years ago by pt.taklifi ▴ 60
4
votes
5
replies
705
views
sum of values in a column
r
3.3 years ago by pt.taklifi ▴ 60
3
votes
3
replies
1.4k
views
remove mitochondrial reads using Bowtie2
alignment
updated 3.3 years ago by ★ 5.1k • written 3.3 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: bigwigs to reads in peaks
3.3 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: bigwigs to reads in peaks
3.3 years ago by pt.taklifi ▴ 60
0
votes
5
replies
1.3k
views
bigwigs to reads in peaks
R atac-seq
updated 11 months ago by 43k • written 3.3 years ago by ▴ 60
0
votes
0
replies
5.0k
views
Comment: C: how to resolve "command not found " error on macOS
3.4 years ago by pt.taklifi ▴ 60
0
votes
1
reply
5.0k
views
Comment: C: how to resolve "command not found " error on macOS
3.4 years ago by pt.taklifi ▴ 60
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