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3
votes
5
replies
446
views
Tutorial for analyzing WGBS data
NGS
methylseq
WGBS
7 weeks ago by
pt.taklifi
▴ 60
0
votes
0
replies
446
views
Comment:
Comment: Tutorial for analyzing WGBS data
7 weeks ago by
pt.taklifi
▴ 60
0
votes
0
replies
446
views
Comment:
Comment: Tutorial for analyzing WGBS data
7 weeks ago by
pt.taklifi
▴ 60
0
votes
0
replies
446
views
Comment:
Comment: Tutorial for analyzing WGBS data
7 weeks ago by
pt.taklifi
▴ 60
1
vote
1
reply
210
views
is there a tool to recover corrupted fastq files
fastq
short-read
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
pt.taklifi
▴ 60
0
votes
2
replies
882
views
are there any downloadable database for tissue specific DMRs?
t-DMR
updated 2.6 years ago by
yupeng he
▴ 80 • written 2.8 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
726
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names
r
ngs
annotate
2.8 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
984
views
Comment:
Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
2.9 years ago by
pt.taklifi
▴ 60
1
vote
4
replies
984
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression
TCGA
RTCAG
2.9 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
984
views
Comment:
Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
2.9 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
1.3k
views
Comment:
Comment: ATACseq batch effect coupled with biological effect
3.0 years ago by
pt.taklifi
▴ 60
1
vote
3
replies
1.3k
views
ATACseq batch effect coupled with biological effect
batch-effect
ATAC-seq
updated 11 months ago by
Ram
43k • written 3.0 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
5.2k
views
Comment:
Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
5.2k
views
Comment:
Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
5.2k
views
Comment:
Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by
pt.taklifi
▴ 60
7
votes
5
replies
5.2k
views
How to create SAF from text file for FeatureCounts
featureCounts
ATAC-seq
updated 11 months ago by
Ram
43k • written 3.0 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
2.8k
views
Comment:
Comment: get count matrix from bam files
3.0 years ago by
pt.taklifi
▴ 60
2
votes
2
replies
2.8k
views
get count matrix from bam files
bam
ATAC-seq
updated 11 months ago by
Ram
43k • written 3.0 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
1.5k
views
how to get feature importance after SVM
high_dimensional
SVM
R
3.0 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
1.3k
views
Comment:
Comment: How to implement k fold cv after randomForest
3.1 years ago by
pt.taklifi
▴ 60
1
vote
2
replies
1.3k
views
How to implement k fold cv after randomForest
k_fold_cv
R
randomForest
3.1 years ago by
pt.taklifi
▴ 60
2
votes
3
replies
725
views
How to remove repeats on galaxy
alignment
repeats
galaxy
updated 3.1 years ago by
Biostar
20 • written 3.3 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
899
views
Comment:
C: how to select features for high dimension data?
3.2 years ago by
pt.taklifi
▴ 60
1
vote
1
reply
768
views
how to determine low quality variants in vcf files
vcf
variant_depth
3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
2.9k
views
Comment:
C: Merge bigwig Files with different intervals
3.2 years ago by
pt.taklifi
▴ 60
1
vote
9
replies
2.9k
views
Merge bigwig Files with different intervals
bigwig
Merge
3.2 years ago by
pt.taklifi
▴ 60
2
votes
1
reply
1.9k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig
bedGraph
updated 3.2 years ago by
ATpoint
82k • written 3.2 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
2.9k
views
Comment:
C: Merge bigwig Files with different intervals
3.2 years ago by
pt.taklifi
▴ 60
4
votes
6
replies
7.5k
views
how to remove duplicates with picard
alignment
deduplication
updated 3.2 years ago by
Pierre Lindenbaum
161k • written 3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
7.5k
views
Comment:
C: how to remove duplicates with picard
3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
7.5k
views
Comment:
C: how to remove duplicates with picard
3.2 years ago by
pt.taklifi
▴ 60
2
votes
1
reply
1.0k
views
samtools index error
alignment
updated 3.2 years ago by
Pierre Lindenbaum
161k • written 3.2 years ago by
pt.taklifi
▴ 60
8
votes
3
replies
899
views
how to select features for high dimension data?
machine-learning
updated 5 months ago by
Ram
43k • written 3.2 years ago by
pt.taklifi
▴ 60
7
votes
6
replies
1.8k
views
nohup with while loop
bash
loop
SRAtoolkit
3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
1.8k
views
Comment:
C: nohup with while loop
3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
1.8k
views
Comment:
C: nohup with while loop
3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
898
views
Comment:
C: error with bowtie2 alignment
3.2 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
898
views
Comment:
C: error with bowtie2 alignment
3.2 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
898
views
Comment:
C: error with bowtie2 alignment
3.2 years ago by
pt.taklifi
▴ 60
2
votes
6
replies
898
views
error with bowtie2 alignment
alignment
error
sequencing
3.2 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
1.2k
views
Comment:
C: bcftools variant calling
3.3 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
698
views
Comment:
C: sum of values in a column
3.3 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
698
views
Comment:
C: sum of values in a column
3.3 years ago by
pt.taklifi
▴ 60
4
votes
5
replies
698
views
sum of values in a column
r
3.3 years ago by
pt.taklifi
▴ 60
3
votes
3
replies
1.4k
views
remove mitochondrial reads using Bowtie2
alignment
updated 3.3 years ago by
Antonio R. Franco
★ 5.1k • written 3.3 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
1.3k
views
Comment:
C: bigwigs to reads in peaks
3.3 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
1.3k
views
Comment:
C: bigwigs to reads in peaks
3.3 years ago by
pt.taklifi
▴ 60
0
votes
5
replies
1.3k
views
bigwigs to reads in peaks
R
atac-seq
updated 11 months ago by
Ram
43k • written 3.3 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
5.0k
views
Comment:
C: how to resolve "command not found " error on macOS
3.3 years ago by
pt.taklifi
▴ 60
0
votes
1
reply
5.0k
views
Comment:
C: how to resolve "command not found " error on macOS
3.3 years ago by
pt.taklifi
▴ 60
68 results • Page
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