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2
votes
5
replies
933
views
best pipeline/practice for analyzing WES for germline and somatic variant calling
calling variant
13 months ago by epigene ▴ 590
0
votes
3
replies
830
views
Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 2.8 years ago by ▴ 830 • written 2.8 years ago by ▴ 590
7
votes
6
replies
6.3k
views
Adapter Trimming Length Cutoff And Quality Trimming Quality Cutoff
ngs
updated 4.6 years ago by ▴ 20 • written 10.1 years ago by ▴ 590
10
votes
8
replies
6.1k
views
Which source of annotation files to use, Ensembl or UCSC?
RNA-Seq ucsc ensembl
updated 6.9 years ago by 23k • written 7.7 years ago by ▴ 590
5
votes
5
replies
2.3k
views
how do aligners determine which reads to apply duplicate reads flag (1024)?
bwa sam
updated 7.6 years ago by 14k • written 7.6 years ago by ▴ 590
3
votes
2
replies
2.1k
views
PE read flag 69 and 137 meaning
sam flag
updated 7.6 years ago by ★ 4.9k • written 7.6 years ago by ▴ 590
1
vote
4
replies
3.5k
views
Tools to analyze Illumina's HumanHT-12 v4 microarray expression data?
microarray gene expression
7.7 years ago by epigene ▴ 590
0
votes
2
replies
2.4k
views
Where to download earlier versions of GWAS Catalog?
GWAS
updated 20 months ago by 43k • written 8.5 years ago by ▴ 590
29
votes
7
replies
34k
views
SAM FLAG for primary alignments, secondary alignments and what's their relations to uniqueness of mapping
SAM
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 590
1
vote
2
replies
1.9k
views
Is there a tools to select alignment from BAM files with particular tag value?
bam
updated 7.7 years ago by 161k • written 7.7 years ago by ▴ 590
1
vote
2
replies
2.3k
views
how to set reporting options for RNA-seq reads alignment with hisat2?
RNA-Seq hisat2
updated 7.7 years ago by 47k • written 7.7 years ago by ▴ 590
1
vote
4
replies
3.6k
views
GTAK VariantsToTable only generates header?
gatk VariantsToTable
7.9 years ago by epigene ▴ 590
8
votes
8
replies
8.2k
views
SAM flag and select reads that map uniquely
samtools
updated 7.9 years ago by 104k • written 7.9 years ago by ▴ 590
2
votes
2
replies
2.8k
views
do you need to reverse complement read 2 in aligning paired end reads?
paired-end alignment
updated 17 months ago by 43k • written 8.8 years ago by ▴ 590
4
votes
1
reply
1.7k
views
why do people filter common variants such as dbSNP and is it right thing to do?
variant
updated 22 months ago by 43k • written 9.1 years ago by ▴ 590
5
votes
5
replies
14k
views
what does a high derived allele frequency mean?
evolution
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 590
0
votes
2
replies
3.9k
views
RNA-Seq: does stranded and directional mean the same thing?
NGS strand RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 590
4
votes
6
replies
7.9k
views
How to extract sequences from multz sequence alignment on UCSC genome browser?
sequence-alignment genome-browser
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 590
3
votes
5
replies
3.9k
views
How To Generate Random Size Matched Background Regions
genome
updated 2.3 years ago by 43k • written 10.5 years ago by ▴ 590
4
votes
3
replies
3.1k
views
how to get promoter coordinates?
genome promoter
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
3
votes
3
replies
2.0k
views
Is size selection always necessary in building NGS library?
sequencing
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 590
27
votes
6
replies
9.5k
views
What Tool To Use To Build An Interactive Heatmap?
heatmap visualization
updated 9.7 years ago by ▴ 70 • written 10.1 years ago by ▴ 590
2
votes
3
replies
3.3k
views
what do Enredo, Pecan, Ortheus stand for?
alignment
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 590
7
votes
5
replies
3.2k
views
Recommended Reading On Evolution Principles/Key Ideas
evolution
updated 10.7 years ago by 5.8k • written 10.7 years ago by ▴ 590
10
votes
9
replies
5.9k
views
Liftover And Sequence Conservation
liftover ucsc sequence conservation
updated 11.0 years ago by ▴ 400 • written 11.0 years ago by ▴ 590
11
votes
3
replies
7.0k
views
Two Sequence Alignment And Alignment Quality Measure
sequence alignment comparison
updated 11.0 years ago by ★ 3.2k • written 11.0 years ago by ▴ 590
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