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395
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E. coli K-12 substr. MG1655
Escherichia_coli E.coli plasmid microbe bacteria
updated 10 months ago by 44k • written 10 months ago by ▴ 20
2
votes
1
reply
737
views
Are housekeeping genes in E. coli essential.
MLST E.coli Escherichia-coli
updated 14 months ago by 44k • written 2.5 years ago by ▴ 20
1
vote
1
reply
611
views
Does Haplotypecaller of GATK find all the mutations?
sequencing GATK genomics
updated 2.6 years ago by 13k • written 2.6 years ago by ▴ 20
0
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1
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3.7k
views
Comment: Comment: How to distinguish orthologs from paralogs?
3.0 years ago by Researcher ▴ 20
3
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5
replies
3.7k
views
How to distinguish orthologs from paralogs?
ortholog evolution paralog homolog
updated 2.9 years ago by ▴ 40 • written 3.0 years ago by ▴ 20
0
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0
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465
views
Changes in the definition of resistant, intermediate, and susceptible bacteria
bacteria EUCAST antibiotic_resistance antibiotic
3.0 years ago by Researcher ▴ 20
0
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0
replies
489
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Resistance breakpoints from CLSI for antibiotic resistance
resistance_cutoffs antibiotic CLSI e._coli
3.0 years ago by Researcher ▴ 20
1
vote
3
replies
4.1k
views
How to deal with the error for "Per Sequence GC Content" in FastQC tool?
sequencing sequence genome fastqc next-gen
updated 3.1 years ago by 142k • written 4.1 years ago by ▴ 20
0
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1
reply
878
views
Comment: Comment: Mapping DNA position to Protein Position in E. Coli
3.1 years ago by Researcher ▴ 20
0
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0
replies
648
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Plasmids in the Resfinder tool?
resfinder sequencing antibiotic resistance
3.2 years ago by Researcher ▴ 20
0
votes
3
replies
878
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Mapping DNA position to Protein Position in E. Coli
gwas genomics sequencing
updated 14 months ago by 44k • written 3.3 years ago by ▴ 20
0
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0
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440
views
sequence assemblies with phenotype labels
sequencing sequence assembly ncbi
3.5 years ago by Researcher ▴ 20
0
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1
reply
678
views
Comment: C: Converting VCF files into bcftools style region co-ordinates
3.6 years ago by Researcher ▴ 20
0
votes
3
replies
678
views
Converting VCF files into bcftools style region co-ordinates
gwas sequencing bcftools vcftools sequence
3.6 years ago by Researcher ▴ 20
1
vote
0
replies
777
views
Burden Analysis in GWAS
gwas sequencing burden analysis sequence
3.6 years ago by Researcher ▴ 20
1
vote
2
replies
805
views
Conflicts in the VCF file
vcf snpeff sequencing GWAS sequence
updated 3.6 years ago by 44k • written 3.6 years ago by ▴ 20
0
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0
replies
805
views
Comment: C: Conflicts in the VCF file
3.6 years ago by Researcher ▴ 20
1
vote
1
reply
782
views
Gene-Gene Interaction Databases for Bacteria
E.Coli bacteria gene-gene-interaction
updated 14 months ago by 44k • written 3.6 years ago by ▴ 20
0
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0
replies
587
views
Characteristic of E. Coli - phylogroup A
E.Coli phylogroups bacteria Escherichia-coli
updated 14 months ago by 44k • written 3.8 years ago by ▴ 20
0
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0
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1.6k
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Comment: C: Why kinship is a random effect while population structure is a fixed effect in G
3.9 years ago by Researcher ▴ 20
0
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1
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968
views
Comment: C: Can we conduct a QTL analysis on a haploid organism?
4.0 years ago by Researcher ▴ 20
0
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1
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968
views
Comment: C: Can we conduct a QTL analysis on a haploid organism?
4.0 years ago by Researcher ▴ 20
2
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5
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968
views
Can we conduct a QTL analysis on a haploid organism?
QTL Quantitative trait locus
4.0 years ago by Researcher ▴ 20
0
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1
reply
1.1k
views
Comment: C: Batch effect in GWAS
4.0 years ago by Researcher ▴ 20
0
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1
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1.1k
views
Comment: C: Batch effect in GWAS
4.0 years ago by Researcher ▴ 20
0
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5
replies
1.1k
views
Batch effect in GWAS
GWAS Genomics Batch-effect sequencing
4.0 years ago by Researcher ▴ 20
0
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1
reply
1.4k
views
Comment: C: Problem with normalization by bcftools
4.1 years ago by Researcher ▴ 20
0
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1
reply
1.4k
views
Comment: Comment: Problem with normalization by bcftools
updated 14 months ago by 44k • written 4.1 years ago by ▴ 20
0
votes
5
replies
1.4k
views
Problem with normalization by bcftools
vcf bcftools samtools
updated 14 months ago by 44k • written 4.1 years ago by ▴ 20
0
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1
reply
1.1k
views
Comment: C: Read groups information?
4.1 years ago by Researcher ▴ 20
0
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0
replies
1.1k
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Comment: C: Read groups information?
4.1 years ago by Researcher ▴ 20
0
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0
replies
1.1k
views
Comment: C: Read groups information?
4.1 years ago by Researcher ▴ 20
0
votes
2
replies
1.1k
views
Comment: C: Read groups information?
4.1 years ago by Researcher ▴ 20
0
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7
replies
1.1k
views
Read groups information?
sequencing sequence picard next-gen picard tools
4.1 years ago by Researcher ▴ 20
0
votes
1
reply
893
views
fields of AddOrReplaceReadGroups method in Picard tools
picard picard tools sequencing next-gen sequence
updated 4.1 years ago by 162k • written 4.1 years ago by ▴ 20
0
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1
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5.3k
views
Comment: C: Per Base Sequence Content
4.1 years ago by Researcher ▴ 20
0
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0
replies
5.3k
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Comment: C: Per Base Sequence Content
4.1 years ago by Researcher ▴ 20
0
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0
replies
4.0k
views
Comment: C: cutting overrepresented sequences (recognized by fatsqc)
4.1 years ago by Researcher ▴ 20
0
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0
replies
5.3k
views
Comment: C: Per Base Sequence Content
4.1 years ago by Researcher ▴ 20
0
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1
reply
4.0k
views
Comment: C: cutting overrepresented sequences (recognized by fatsqc)
4.1 years ago by Researcher ▴ 20
0
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1
reply
4.0k
views
Comment: C: cutting overrepresented sequences (recognized by fatsqc)
4.1 years ago by Researcher ▴ 20
0
votes
2
replies
4.0k
views
Comment: C: cutting overrepresented sequences (recognized by fatsqc)
4.1 years ago by Researcher ▴ 20
0
votes
3
replies
5.3k
views
Comment: C: Per Base Sequence Content
4.1 years ago by Researcher ▴ 20
0
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0
replies
5.3k
views
Comment: C: Per Base Sequence Content
4.2 years ago by Researcher ▴ 20
0
votes
1
reply
5.3k
views
Comment: C: Per Base Sequence Content
4.2 years ago by Researcher ▴ 20
0
votes
1
reply
5.3k
views
Comment: C: Per Base Sequence Content
4.2 years ago by Researcher ▴ 20
0
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2
replies
4.0k
views
Comment: C: cutting overrepresented sequences (recognized by fatsqc)
4.2 years ago by Researcher ▴ 20
7
votes
16
replies
4.0k
views
cutting overrepresented sequences (recognized by fatsqc)
sequencing genome-sequence fastqc genome sequence
4.2 years ago by Researcher ▴ 20
0
votes
2
replies
5.3k
views
Comment: C: Per Base Sequence Content
4.2 years ago by Researcher ▴ 20
0
votes
2
replies
5.3k
views
Comment: C: Per Base Sequence Content
4.2 years ago by Researcher ▴ 20
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