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Mapping DNA position to Protein Position in E. Coli

Hi, Could someone please help me with how can I map DNA position to Protein Position and map DNA variant to Protein Variant in E. Coli?

gwas genomics sequencing
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updated by Ram Ram • written by Researcher • Researcher

1 answer

Ensembl VEP

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written by Emily Emily

Dear @Emily_Ensembl, I found http://bacteria.ensembl.org/info/website/index.html has also the data for bacteria (E. coli). However, it needs the identifier for variant. In the case of humans, I know that the variants have some ids (via dbsnp, etc). However, I do not know what the id means for bacteria (or E. coli, in specific)?

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written by Researcher • Researcher

You don't need an identifier, just the genomic position. For VCF input, just put a . in the ID column.

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written by Emily Emily

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