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2
votes
3
replies
381
views
clustalo - align milions of short seq, memory issue
memory clustalo
updated 24 days ago by ★ 27k • written 24 days ago by ▴ 120
0
votes
0
replies
381
views
Comment: Comment: clustalo - align milions of short seq, memory issue
22 days ago by emmanouil.a ▴ 120
0
votes
1
reply
378
views
Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
11 weeks ago by emmanouil.a ▴ 120
1
vote
3
replies
378
views
CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
benchmarking truvari cnv
updated 11 weeks ago by ▴ 300 • written 11 weeks ago by ▴ 120
0
votes
0
replies
866
views
Answer: Answer: Tower Server configuration for NGS data analysis
12 weeks ago by emmanouil.a ▴ 120
0
votes
0
replies
421
views
Comment: Comment: Fast tool for FASTQ Q30 calculation
3 months ago by emmanouil.a ▴ 120
3
votes
2
replies
421
views
Fast tool for FASTQ Q30 calculation
Q30 FASTQ Q20
updated 3 months ago by 43k • written 3 months ago by ▴ 120
0
votes
1
reply
752
views
Comment: Comment: CRAM file version
4 months ago by emmanouil.a ▴ 120
2
votes
6
replies
752
views
CRAM file version
cram
updated 4 months ago by 43k • written 4 months ago by ▴ 120
0
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1
reply
752
views
Comment: Comment: CRAM file version
4 months ago by emmanouil.a ▴ 120
0
votes
0
replies
1.6k
views
Comment: Comment: clustalw warning: Bisectingkmeans(): Can't split cluster no. xx
7 months ago by emmanouil.a ▴ 120
0
votes
1
reply
1.6k
views
Comment: Comment: clustalw warning: Bisectingkmeans(): Can't split cluster no. xx
8 months ago by emmanouil.a ▴ 120
2
votes
3
replies
725
views
CNV benchmarking
CNV Benchmarking
updated 9 months ago by ★ 2.9k • written 9 months ago by ▴ 120
0
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0
replies
725
views
Comment: Comment: CNV benchmarking
9 months ago by emmanouil.a ▴ 120
0
votes
0
replies
314
views
SNP concordance between NGS and SNParray
ngs snparray genotype
13 months ago by emmanouil.a ▴ 120
1
vote
1
reply
404
views
NA14622 data for benchmarking
benchmarking vcf bed GiAB
updated 14 months ago by 142k • written 14 months ago by ▴ 120
0
votes
0
replies
987
views
Comment: Comment: run "sra-human-scrubber" with SLURM
21 months ago by emmanouil.a ▴ 120
0
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1
reply
987
views
Comment: Comment: run "sra-human-scrubber" with SLURM
21 months ago by emmanouil.a ▴ 120
1
vote
4
replies
987
views
run "sra-human-scrubber" with SLURM
slurm sra-human-scrubber
21 months ago by emmanouil.a ▴ 120
0
votes
2
replies
1.2k
views
split vcf, choice
vcf mergedvcf spltvcf
written 6.1 years ago by ▴ 120
0
votes
0
replies
500
views
Custom Bioinformatics pipeline validation - general guidance
pipeline validation
2.4 years ago by emmanouil.a ▴ 120
1
vote
2
replies
1.2k
views
Exclude reads with mate mapped to a different chr
samtools
updated 2.5 years ago by ★ 3.7k • written 2.5 years ago by ▴ 120
0
votes
2
replies
1.1k
views
Unicycler and GNU parallel
Unicycler parallel
2.7 years ago by emmanouil.a ▴ 120
0
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0
replies
1.1k
views
Comment: Comment: Unicycler and GNU parallel
2.7 years ago by emmanouil.a ▴ 120
1
vote
0
replies
4.5k
views
Comment: Comment: Good annotation databases for a VCF file (somatic variants)
2.9 years ago by emmanouil.a ▴ 120
0
votes
0
replies
4.5k
views
Comment: Comment: Good annotation databases for a VCF file (somatic variants)
2.9 years ago by emmanouil.a ▴ 120
0
votes
0
replies
3.7k
views
Comment: Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
2.9 years ago by emmanouil.a ▴ 120
0
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1
reply
3.7k
views
Comment: Comment: Reproduce Genome in a Bottle analysis from NA12878 fastq?
2.9 years ago by emmanouil.a ▴ 120
0
votes
1
reply
2.3k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
2.9 years ago by emmanouil.a ▴ 120
0
votes
0
replies
613
views
Read group: ID, PU definition and multi-lane (same sample)
multilane group_read RG
3.0 years ago by emmanouil.a ▴ 120
2
votes
2
replies
4.5k
views
Answer: Answer: Good annotation databases for a VCF file (somatic variants)
3.0 years ago by emmanouil.a ▴ 120
1
vote
1
reply
2.3k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
3.0 years ago by emmanouil.a ▴ 120
0
votes
1
reply
2.3k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
3.0 years ago by emmanouil.a ▴ 120
1
vote
0
replies
2.3k
views
Comment: Comment: troubleshooting benchmarking small variants: hap.py and rtg
3.0 years ago by emmanouil.a ▴ 120
6
votes
9
replies
2.3k
views
troubleshooting benchmarking small variants: hap.py and rtg
benchmarking
updated 2.5 years ago by 22k • written 3.0 years ago by ▴ 120
0
votes
0
replies
1.5k
views
Comment: A: bcftools roh with -e option... never finish
3.4 years ago by emmanouil.a ▴ 120
3
votes
3
replies
1.5k
views
bcftools roh with -e option... never finish
bcftools roh
updated 2.1 years ago by ▴ 50 • written 4.3 years ago by ▴ 120
0
votes
0
replies
759
views
CNVkit: call sex chr - germline analysis
next-gen
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 120
0
votes
0
replies
976
views
Comment: C: Split reads (fastq) x read barcode sequence (no barcode in RG)
3.5 years ago by emmanouil.a ▴ 120
1
vote
2
replies
976
views
Split reads (fastq) x read barcode sequence (no barcode in RG)
next-gen sequence
updated 3.5 years ago by 142k • written 3.5 years ago by ▴ 120
0
votes
0
replies
732
views
CNVkit intervarls questions
CNVkit
3.5 years ago by emmanouil.a ▴ 120
0
votes
0
replies
713
views
Comment: C: wes uncovered regions: how to link the gene name to the uncovered genome coordin
4.3 years ago by emmanouil.a ▴ 120
0
votes
1
reply
2.7k
views
Comment: A: hg38 Ig regions
4.3 years ago by emmanouil.a ▴ 120
9
votes
8
replies
2.7k
views
7 follow
hg38 Ig regions
assembly sequence
updated 13 months ago by • 0 • written 5.1 years ago by ▴ 120
1
vote
3
replies
713
views
wes uncovered regions: how to link the gene name to the uncovered genome coordinates
next-gen gene
4.3 years ago by emmanouil.a ▴ 120
3
votes
4
replies
3.2k
views
GATK4 training for beginners
GATK4 training
updated 6.2 years ago by ★ 1.2k • written 6.3 years ago by ▴ 120
1
vote
0
replies
3.2k
views
Comment: A: GATK4 training for beginners
6.3 years ago by emmanouil.a ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
6.3 years ago by emmanouil.a ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
6.3 years ago by emmanouil.a ▴ 120
0
votes
1
reply
1.3k
views
Comment: C: an alternative "join" option for annotated-vcf handling in trios
6.3 years ago by emmanouil.a ▴ 120
51 results • Page 1 of 2
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