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1
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2
replies
609
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Liftedover vcf header/contig compatibility
crossmap vcf bcftools liftover contig
updated 9 months ago by ▴ 390 • written 9 months ago by ▴ 90
0
votes
3
replies
798
views
Removing overrepresented sequences in paired end RNA-seq
cutadapt rna-seq trimgalore
updated 10 months ago by 43k • written 10 months ago by ▴ 90
2
votes
1
reply
485
views
Is RNA-Seq well suited for studying pseudogenes and lncRNA?
rna ncRNA transcriptome pseudogene rna-seq
updated 11 months ago by 13k • written 11 months ago by ▴ 90
0
votes
7
replies
1.5k
views
Why are some WES VCFs larger than others?
WES sequencing genomics NGS exome
11 months ago by Kermit ▴ 90
0
votes
3
replies
682
views
How many basepairs are genes padded by in WES?
NGS sequencing WES exome
updated 15 months ago by ▴ 280 • written 15 months ago by ▴ 90
3
votes
4
replies
1.1k
views
Annotate list of Ensembl genes
gene functional-annotation
updated 19 months ago by ▴ 450 • written 20 months ago by ▴ 90
2
votes
2
replies
577
views
Do LoF/GoF count toward transcript count?
expression rna-seq rna
20 months ago by Kermit ▴ 90
1
vote
2
replies
858
views
TCGA - Is vital_status subject to follow_up duration?
phenotype cohort prognostic survival tcga
20 months ago by Kermit ▴ 90
2
votes
8
replies
1.3k
views
If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
RNA miRNA sequencing RNA-seq
13 months ago by Kermit ▴ 90
2
votes
7
replies
1.1k
views
Gene types to use for RNA counts case-control
rna rnaseq tpm
updated 21 months ago by 19k • written 21 months ago by ▴ 90
4
votes
5
replies
1.0k
views
Reference counts for RNA-seq
expression rna rna-seq tpm transcripts
updated 21 months ago by 82k • written 21 months ago by ▴ 90
3
votes
3
replies
829
views
What are GL*.* values in chr column of rna seq counts?
reference sequencing rna-seq rna
updated 21 months ago by 142k • written 21 months ago by ▴ 90
8
votes
4
replies
1.1k
views
Are small insertions always single-stranded?
indel
updated 3.5 years ago by 20 • written 4.9 years ago by ▴ 90
1
vote
0
replies
972
views
How do BOLT and SAIGE calculate LD?... with PLINK LD?
plink bolt saige gwas
4.3 years ago by Kermit ▴ 90
0
votes
2
replies
701
views
Noncoding annotations for WGS?
noncoding intron annotation
4.4 years ago by Kermit ▴ 90
6
votes
5
replies
1.8k
views
VCF - does mother or father come first in the comma separated ALT
vcf gvcf heterozygous
updated 4.6 years ago by 20 • written 4.9 years ago by ▴ 90
0
votes
2
replies
1.1k
views
How rare are somatic mutations?
tumor mutect varscan somatic SNP
4.6 years ago by Kermit ▴ 90
0
votes
1
reply
1.2k
views
Are SV tools as thorough in CNV detection as CNVkit?
cnv sv cnvkit manta parliament
4.8 years ago by Kermit ▴ 90
8
votes
4
replies
3.1k
views
VCF - what are overlapping variants?
vcf
updated 4.9 years ago by 161k • written 4.9 years ago by ▴ 90
2
votes
3
replies
976
views
gVCF what is a "break-end replacement"
gvcf
4.9 years ago by Kermit ▴ 90
0
votes
0
replies
1.2k
views
PubSub or workflows or both?
workflow pubsub events python
5.4 years ago by Kermit ▴ 90
3
votes
1
reply
921
views
Does vcf spec indicate cnv duplication of snps?
vcf cnv snp snv ngs
5.8 years ago by Kermit ▴ 90
17
votes
9
replies
2.8k
views
6 follow
Workflows! Where is the code?
cwl wdl workflows
updated 6.0 years ago by ★ 1.9k • written 6.0 years ago by ▴ 90
4
votes
2
replies
1.5k
views
Encrypting BAM files
gdpr hipaa encryption
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 90
24 results • Page 1 of 1
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